Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq1239 131 4e-26 >seq1239 Length=2566 Score = 131 bits (144), Expect = 4e-26 Identities = 733/1160 (63%), Gaps = 61/1160 (5%) Strand=Plus/Plus Query 4168 ATGGACATGAACGACGCGGCGAAGTCCGTCCAGCCGGCGTCGAACTCCAGCCTGCCCTTG 4227 || |||| ||||| ||| |||| || ||||| ||||| || | || | ||| |||| Sbjct 1301 ATCGACAGGAACGCCGCCGCGACCTCGGTCCAACCGGCATCCCATTCGA---TGCGCTTG 1357 Query 4228 CT---GATCACGTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACGTCCACGGAATAGGTG 4284 | ||||||||| || ||||||||||||||||| | ||| | |||| | || ||| Sbjct 1358 CCCTGGATCACGTCCTGGGCCTTGAGCACCAGGGCATTCTTCGCCTCCAGGCTGTA-GTG 1416 Query 4285 AAGCCTTCGGCAT---CCGGACG--GAACTTCTGCACCAGGCGGAACACCGCATCGCCGA 4339 || |||| | |||| | ||| | | ||||||| ||||||| | | |||| Sbjct 1417 AA----TCGGAGTAGCCCGGGGGAAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGA 1472 Query 4340 TGCCGGTCCGGTCGATGCCCACGTAGGCGACGTCGTAGCGCTCAGCGACGC-GCCGGATG 4398 |||||| ||||||||| | || ||||| | ||||||| || || | ||| Sbjct 1473 CGCCGGTAATGTCGATGCCGATGTGCTGGACGTTGAAGCGCTC-GCACAGCTTCTCGATC 1531 Query 4399 GCGCCGGCCTGTTCCTCGTA-GTCGATGCCGCGGAACTGGTGCCGCTCCAGCACGCGGAA 4457 ||||| | | | | | || | || || | |||| |||||| | ||||| Sbjct 1532 TGCTTTGCCTGATGCGTGAACGACG-TCCCCCGCCAGCTGTGCTTCTCCAGGATTCGGAA 1590 Query 4458 CTTGCCGCCCGGTACCAGTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 4517 |||||||||||| |||| |||| Sbjct 1591 CTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACGTCGCGTCGTCGCGGGTTCG 1650 Query 4518 NNNNTTGGGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGG 4577 ||||||| || |||| ||| ||||| |||||| |||||||||| || | ||| Sbjct 1651 AC---TGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTCCGG 1707 Query 4578 CCGGAAGTCTTCCCATACCTCCCAACTGTCCACCATCCCGCGCATGAGCATCG--CGAGC 4635 | |||| ||||| ||||| ||| | |||| || ||| | || Sbjct 1708 GTCGTAGTCAGTCCATA-GGCCCAA--GTCGGAATAGCAGCGCTCCAG-GTCGGTCAAG- 1762 Query 4636 GGAAACACCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGT 4695 | || | | | | || ||||||||| |||||||| ||| | |||| | Sbjct 1763 GCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCT 1822 Query 4696 TCGCTGTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCA 4755 ||| ||||||||| |||| | || |||||||||||||||||||||||| || || Sbjct 1823 TCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCG 1882 Query 4756 TCCTCCACCGTCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGC 4815 || | | ||| | || | ||||||||| ||||||| ||| | |||| | | | | Sbjct 1883 TCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAACGCGCCGGCATGGATC 1942 Query 4816 GCGGCGTGGCTCAGGTCGA--GCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACA 4873 || | ||| || | | || | || | | ||| | ||||| | | |||| Sbjct 1943 TGCGCTTCGCT--GGGCCACGGCCCGGCCT-TCTTTCC--GCGCTTGCTGTTGCGGAACT 1997 Query 4874 GTGCGCCGGACCAGAACGGATAGGCCTCATGCG---ACAAGCTGGACGGCGTGGAGAAGT 4930 |||||| |||| ||||||| |||| |||| | |||| ||||||||||||| Sbjct 1998 CCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTG---GGCGTGGAGAAGT 2054 Query 4931 AGGTCTGACGCCAGTGCTTG--TGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTG 4988 ||||| | ||||| | ||| || ||||| || ||| ||| | |||| | ||| Sbjct 2055 AGGTCAGGCGCCACT--TTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTG 2112 Query 4989 GAAGCGCGGCACCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGT 5048 ||| || | |||||| ||| |||| ||| | || |||||| || |||||| || Sbjct 2113 GAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGT 2172 Query 5049 GCGGGCGTTCGTGCCGAGAA-----AGT-------AGAGCGTGGCGCCGTTGGGCAGCAC 5096 | | |||||| ||||| ||| | || || || | ||| || | Sbjct 2173 GTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGAT 2232 Query 5097 CATCGGATCGCCCTTCAGCTCGATCCCGGCCGCGTCCTTGGCGAACTGGATGATGTA-TT 5155 || |||| ||| ||||||||| || | | | ||||||| || |||||| | Sbjct 2233 GATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGCGACGATGTAGCT 2292 Query 5156 GCTTGAAGACGTGCGCCTGCGCCTTGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGG 5215 || ||| || | | ||| || ||| || || ||||||||||||||| ||||| Sbjct 2293 GC-GGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCA 2351 Query 5216 TCAGCGCGTCGATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCT 5275 || ||||| |||||||| ||| |||||||| | ||| |||||||| || || Sbjct 2352 GCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACT 2411 Query 5276 TGAGCAGGTTGCGGATGCGC 5295 | || | | |||||| ||| Sbjct 2412 TCAGGATATGGCGGATCCGC 2431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123906655195380