Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq7 98.7 8e-16 >seq2 Length=44367670 Score = 114 bits (126), Expect = 1e-20 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || ||||| |||||||| ||||||||| |||||||| || || Sbjct 7316047 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC- 7315989 Query 33961 AATTGTCG-CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | |||| |||| ||||| ||||| || ||||| |||||||||||| || Sbjct 7315988 AAGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGG 7315929 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTC 34076 | || || |||||| | | || |||| || | | | | || | ||||| Sbjct 7315928 GATGCCTTCCTTGTCC-TGGATCTTGGCTT--TGACATTGTCGATCGTGTCTGATGATTC 7315872 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 7315871 GACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 7315818 >seq7 Length=41685129 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || |||||||| |||||||| ||||||||| |||||||| || ||| Sbjct 26880629 CCTCCTCTCAGGCGTAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 26880570 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| || | ||||| ||||| || ||||| |||||||| || ||| Sbjct 26880569 AGCGTCCTCCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCTGGCGGG 26880510 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || |||||| || || ||| || | || | | || | |||||| Sbjct 26880509 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG---TCGATCGTGTCGGATGATTCG 26880453 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || || || |||||||| ||||| ||||||||| Sbjct 26880452 ACCTCTAGGGTTATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATTTTT 26880399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397050084241090