Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq1239 224 2e-54 seq1298 163 6e-36 seq2075 122 2e-23 seq1274 95.1 3e-15 >seq1239 Length=2566 Score = 224 bits (248), Expect = 2e-54 Identities = 649/983 (66%), Gaps = 57/983 (6%) Strand=Plus/Plus Query 13419 CTCTATCTCCTGCGCCTGATACTGGAAGTTCAACCCGCGCCAGTAGTGCTTTTCCAGCAC 13478 ||| |||| || ||||||| | ||| | ||| |||||| |||||| ||||| | Sbjct 1525 CTCGATCTGCTTTGCCTGATGCGTGAACGACGTCCCCCGCCAGCTGTGCTTCTCCAGGAT 1584 Query 13479 TCGGAAGCGCTCGCCGGCAACCGTGGGCGGGGCGACCACCACCAGGGTGGCATTGTCGCG 13538 |||||| |||| | || ||||||||| || || || || || | |||||| Sbjct 1585 TCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACGTCGCGTCGTCGCG 1644 Query 13539 GGTGCGGCTCGGGTCATAACCCATCCACACCTCGCGCCGCCCGAACGGGTCAGGAC-GCC 13597 ||| || || |||||||| || | ||| ||| ||| ||||||| || | | | Sbjct 1645 GGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTC 1704 Query 13598 CGGGCTTGTAGTCCTCCCATCGGGTGGGGTCC--ACCCCTGCCCGCTCCATGTCCTGGAA 13655 |||| | |||||| |||| || ||| | | || |||||| ||| || Sbjct 1705 CGGG-TCGTAGTCAGTCCATAGGCCCAAGTCGGAATAGCAGC--GCTCCAGGTCGGTCAA 1761 Query 13656 CTTGAACACAGACAGGGCATCGTCGATAAAGCGGCACATGTAGAGGCGGTCGAACACCTC 13715 ||| ||| | ||| |||||| || ||||||| | || | ||||| ||| Sbjct 1762 GGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTC 1821 Query 13716 CTCCGGGTACTCGTCCTTGAGCTCCTCGATGTCGATGAGGTGGCAACCGA-GGCGAATGG 13774 || |||||| || || ||| | ||||| |||| ||| ||| ||||| ||| Sbjct 1822 TTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGA-TGG 1880 Query 13775 CGTCCTCGATGGTGATGACGTAGCGCCACTGCCTGTCAGGGCAGATGCGGCCGCCGTCGC 13834 |||| | || |||||||| | ||||||||||| ||| ||||| | || ||||| || Sbjct 1881 CGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAA-CG--CGCCG--GC 1935 Query 13835 GTAGGTCATCTTCACCAGGGAAGTCGATGGCCACCCGGCTCGGCCG-CTGTCC---CTTC 13890 | | |||| | | ||| ||| | | |||| ||||| || ||| ||| Sbjct 1936 ATGG---ATCTGCGCT-------TCGCTGGGC-CACGGCCCGGCCTTCTTTCCGCGCTTG 1984 Query 13891 CAGC----GA-----TCCCCGGTCCAGAACCGGTACGCCTCGTGC---ACCTTGCTCGAC 13938 | | || || ||||||||| || | || |||| |||| ||| ||| | | Sbjct 1985 CTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGC 2044 Query 13939 GGGGTCGAGAAGTAGGTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACA-TC 13997 | || ||||||||||| |||||| | || | ||||| || |||||||| || Sbjct 2045 GTGG---AGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTC 2101 Query 13998 AGACAGCTTCTCGAAGTTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCG 14057 | |||||||| ||| |||||||||||||| ||||||||||||||||| |||| | Sbjct 2102 TG-CAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTA 2160 Query 14058 GGACTGGGCACTGTTGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCC------------C 14105 | ||| || ||||| ||| || ||| || |||| || |||| | Sbjct 2161 GCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTC 2220 Query 14106 GTTCGACAGCACGATGGGGTTGCCGGTCAGGGTGACGCCGAGGAAGGTCTGGGCGATCTT 14165 || || | |||||| ||||||| ||| || ||| | | ||||| | Sbjct 2221 TTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGC 2280 Query 14166 GCAGATATAGGAGCGGAACACCTCCGCCTGGGCGCGGGTGGCGGACAGGAAAATCTGGTT 14225 | ||| ||| ||||||||| || | |||||||||| | |||||||||||||||||||| Sbjct 2281 GACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTT 2340 Query 14226 GCCACCCGTCAGAATGGCATCCTCCAACGCCTCGCCGGCGAAATAGTAAGTCATCCCGAT 14285 | | || ||||| | || ||| ||||| ||| ||||||| ||||| |||| |||||| Sbjct 2341 GTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGAT 2400 Query 14286 CTGACGGGACTTGAGAATGTTACGGGTGCGCGGCAGCGCCGGGTCGTTCTTGGCCTCCCG 14345 ||| || ||||| || || | ||| | |||| | ||| | ||||| ||| | Sbjct 2401 CTGGCGCGACTTCAGGATATGGCGGATCCGCGCCGTAAGCGGATTCTTCTTCGCCGCGAA 2460 Query 14346 CACACGCAACTGATAGCCGAACA 14368 || || ||| |||||||||| Sbjct 2461 CAGTTCCAGCTGGTAGCCGAACA 2483 Score = 84.2 bits (92), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 11544 GGGATGTTCACGAACATCGAGCGGAAGTTCCCTACCCCTTTGGAGTT--CGCGATCATCT 11601 |||||||| |||||||| ||||||||||| || || || || | || ||| ||| || Sbjct 415 GGGATGTTGACGAACATAGAGCGGAAGTTACCGACTCCCTT--ACTTGCCGCAATCTGCT 472 Query 11602 CCTTCATCTCCTCTTCGGTGTCGTCGTCCATGTTGGGGTCGGTCGCGTAGAAGATGAACC 11661 |||| | |||||| || || || || |||| ||| ||||| | | | Sbjct 473 GTTTCAGATTCTCTTCATCTTCTTCCGACAAATTCTCGTCGTTCGTATAGAACACATATC 532 Query 11662 CCATGTGGGCGCCGTTGAGGAAGTAGCGGCGTCGGAACAGGGTGGCGTCCTGGTTGAGCA 11721 | ||||||||||| | ||||||| || || ||||| || || | | ||| | || Sbjct 533 CGGCATGGGCGCCGTTACTGTAGTAGCGCCGGCGAAACAGTGTCGCCGCTTCGTTCAACA 592 Query 11722 GCGCAGACTGCAGGCCGCCAAGGTAATCGGGCATGCCATAGACCTGCTGCTC 11773 || ||||| || ||||| | ||| ||||| || || |||| | |||||| Sbjct 593 GCAGCGACTGGAGCCCGCCCAAGTAGTCGGGTATCCCGTAGATGTTCTGCTC 644 >seq1298 Length=2320 Score = 163 bits (180), Expect = 6e-36 Identities = 311/454 (69%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 24513 GCCACCGAGATTGTCCGCTCCTCCTACGACATCCAGTCCGCCATCGCCGGGCTGGAGGGC 24572 ||||||| |||||||||| ||||| | || | ||| || ||||||| |||| Sbjct 1598 GCCACCGCCTTTGTCCGCTCGGCCTACCAGGTCGAAGGCGCGATAAAGGGGCTGGTGGGC 1539 Query 24573 AACGAGCTGCCCGCCTTCACCCGCGCCTCGACCGTCCTGGCCAAGGCCACCAAGGCCGAC 24632 ||||||||| | || ||||| ||| || | ||| ||||||||||||||| |||||| Sbjct 1538 AACGAGCTGGCAGCGATCACCAACGCGTCCAACGTGCTGGCCAAGGCCACCCGCGCCGAC 1479 Query 24633 ACCGCCACCATCACCAACTACATGGGCACCATGTACGGCATCTTCGAGCAGCAGGCCAAG 24692 ||| ||| || || | |||||| |||||||||||||| | ||| || |||||| | Sbjct 1478 GCCGACACGATGACAACCTACATCGGCACCATGTACGGGCTGTTCCAGGGCCAGGCCGAT 1419 Query 24693 AGAATGGGCAAGGCCAACTGGGTGGAAGATGTGGCGGGCAAGACGGCGCTGGCGGTACAG 24752 |||||| ||| || ||||| || | || | || |||| || | || || ||| Sbjct 1418 GCGATGGGCCGGGCAAAGTGGGTCGAGCAACTGACCGGGCAGACCGCCCGCGCCGTCCAG 1359 Query 24753 CTGTTCAAGACCACCGGCCAGGGCATGGCCGATGCCTTCGGGGCCATCGGTGCCAACGCC 24812 |||||| || ||||| | ||| ||| || ||| ||| | ||| | || Sbjct 1358 CTGTTCCGCACGTCCGGCGAACAGATGAACGAGGCGTTCAAGGCTACCGGCATCGGTGCA 1299 Query 24813 ACGGCGGCCGGGGTGTCGATGGATGAACAGTTCGCCGTGCTGGGCCAACTGCAGGCC-AC 24871 |||| ||||| | || ||| |||||| | || || || ||||| || || | || Sbjct 1298 TCGGCCGCCGGCGCCTCCCTGGTCGAACAGATGGCGGTCCTCGGCCAGTTG-AGCCAGAC 1240 Query 24872 CATGGGCGGCGGCGAGGC---CGGGACCAAGTTCAAGGCGTTCCTGGCCGGGGTGGGCAG 24928 ||||| ||||||||||| |||| | | ||| |||||| | | || || Sbjct 1239 CATGGAGGGCGGCGAGGCAGGCGGGCTC---TACAAAGCGTTCTTCGAAAACGTCAGCGC 1183 Query 24929 TGCCCAGAAGGCGCTCGGCATGAAGTTCACCGAC 24962 |||||| | ||| |||||||||||||||||| Sbjct 1182 CGCCCAGGACAAGCTGGGCATGAAGTTCACCGAC 1149 >seq2075 Length=1248 Score = 122 bits (134), Expect = 2e-23 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 675 CACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTC 734 |||| |||| |||||||| ||||| ||||||||| || | |||||| | | Sbjct 36 CACCACATCAGCCAGGTGGCCGGGGCTGAAGTGGGCGTATTTCTGCGTCATGGCCAGGGT 95 Query 735 GGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACT 794 || |||||| | || ||| ||||| |||||||| |||||||||||||||| |||| || Sbjct 96 GGAGTGGCCCAAGACGCGTTGTAGGGTCAGGATGTCGCCGCCGTTCATCATGTAGTGGCT 155 Query 795 GGCGAAGGTATGGCGCAGAACGTGGGT 821 ||||||||| |||||||| |||||||| Sbjct 156 GGCGAAGGTGTGGCGCAGGACGTGGGT 182 >seq1274 Length=2403 Score = 95.1 bits (104), Expect = 3e-15 Identities = 180/264 (68%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 20089 GGTGAGCATCGCCGACAGCCCCTGCCGGGTGAAGACCGGCGCCCTGGTGGGCCTTGGCAA 20148 ||| |||||||||||||||||| || ||| | ||||||| |||| ||||| ||| | Sbjct 357 GGTCAGCATCGCCGACAGCCCCATGCGCGTGGCCAGCGGCGCCGTGGTCGGCCTCGGCGA 298 Query 20149 CAAGCCGGTGGGCAAGGACGGGATCCCGCTGCCACTGGCCACCCTGCAGACCCTGGAGGC 20208 | ||| | |||||||||| | || ||| ||| || ||| | || | || Sbjct 297 GACGCCCCGCGACAAGGACGGGGTGCCTCTGGATATGG---CCGTGCTGGCCGAGCTGGA 241 Query 20209 CAA---CCGCTATTCGGTGCCGATGTGGTACCCGGACTATGACGGGATCTACTGGGCCGA 20265 ||| |||||| || || || | ||||| |||||| || | || ||||| ||| Sbjct 240 CAAGGCCCGCTACTCCGTCCCTCAGACCTACCCCGACTATCCGGGCACCTTCTGGGGCGA 181 Query 20266 TGGCCGCACCCTGGACGCCGAGGGCGGCGACTACCAGGTGATCGAGAACCTGCGCATTGC 20325 |||| | || |||||| ||| | |||| | | || | |||||||||||| | || Sbjct 180 TGGCAACCTGCTCGACGCCCCCGGCAGTGACTTCAACGTCGTGGAGAACCTGCGCGTGGC 121 Query 20326 CTACAAGGTGGCGCGCCGGATGCG 20349 | |||||| || || || |||| Sbjct 120 CGACAAGGCCGCCCGGCGCGTGCG 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108627116985630