Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8 136 9e-27 seq6 107 4e-18 >seq8 Length=44809562 Score = 136 bits (150), Expect = 9e-27 Identities = 571/882 (65%), Gaps = 27/882 (3%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || || | || ||||| ||||| |||||||| | ||| Sbjct 36833705 TCTGCATGTTCCCAATCCAATACCCTCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCT 36833646 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAA 242984 |||| |||||| |||||||||| ||||| | | || || ||||||| ||||| Sbjct 36833645 CCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAGGACACA-CG-CGACTGG---GAGAA 36833591 Query 242985 ACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGA 243044 ||||| |||| || || || |||||||||||| | || | || ||||| | |||||| Sbjct 36833590 TCTCAACGACGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGA 36833531 Query 243045 TGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGG 243103 || || || | || ||||| | | || ||| || || ||| | |||| Sbjct 36833530 CGGAATCGTCCTCGAGAATCT-CGCCTCTCGGTTCATGTCCGACGTCCAGGTCTCCGAGG 36833472 Query 243104 CACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC 243163 | || || || | | ||| | | ||| ||||| || || || | Sbjct 36833471 CGCGCGCCTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCC 36833412 Query 243164 TTCTTATCGACGCGCTTATTTC-AGATGAACAA-GAGCGAAACGAGCTTTTCGACGCCAT 243221 | || | ||| || || || || ||||| ||||| || | || ||| ||| || Sbjct 36833411 TCCTGTTAGACACG--TACATCAAGGACAACAAGGAGCGGGACCATCTCTTCCGCGCGAT 36833354 Query 243222 CGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG 243281 ||| | ||| || || || ||||| ||||||| || |||| | || || Sbjct 36833353 CGAGACCATCCCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGA--TGGG 36833296 Query 243282 T--AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCC 243339 | | | ||||| ||| | |||| |||| | |||||| ||||| || | || ||| Sbjct 36833295 TCCCAGACTTTTGCCGAGAGGATCGTGGCCTTCGCGTGCGTCGAAGGGATATTCTTCTCC 36833236 Query 243340 GGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTG 243399 || || |||||| | ||||| |||||| ||| ||| | |||||||| | | Sbjct 36833235 GGTAGCTTCTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCTGGGTTGACCTTC 36833176 Query 243400 TCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTA 243458 || |||||| | ||| | ||||| ||||| ||| | |||| ||| || || || Sbjct 36833175 TCCAACGAGCTGATCTCGAGAGACGAAGGCCTGCACTGCGATTTCGCGTG-CCTGATCTA 36833117 Query 243459 TTCAAAGCTCC--AGAAC-AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGC 243515 | |||| || || ||||| | || || || ||| | || || Sbjct 36833116 ---CACCCTCCTGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATCGTGTGCGACGC 36833060 Query 243516 AGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAA 243575 || || | ||| | ||| || | |||||||| |||| ||| | | | || ||||| Sbjct 36833059 CGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGGGATGAA 36833000 Query 243576 CTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGG 243635 | ||| | ||| | ||||| ||||| || || || || | |||| |||||||| Sbjct 36832999 CCGTGATTTGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGCTTTTGGGGGCGCTTGG 36832940 Query 243636 TTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCA 243695 || | ||| |||||| | ||| || |||| | |||||| | || |||||||| Sbjct 36832939 GTACGGGAAGGTGTACGGTGCGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTCA 36832880 Query 243696 AGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||||| ||||||||||| ||| | || ||||||| || Sbjct 36832879 GGGGAAAACCAACTTCTTCGAGAAGAGGGTTGGTGATTACCA 36832838 >seq6 Length=32494073 Score = 107 bits (118), Expect = 4e-18 Identities = 299/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| ||| | |||| || | | ||||| ||||| || | || ||||| || ||| Sbjct 29608711 TTTGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCCGGTAGCTTC 29608652 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||| | ||||| |||||| ||| || | ||||| || ||| | || |||||| Sbjct 29608651 TGCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAG 29608592 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 | ||| | ||||||||||| ||| | |||| ||| || || || || || Sbjct 29608591 CTGATCTCGAGAGACGAGGGCCTGCACTGCGACTTCGCGTGC-CTGATCTACTCC---CT 29608536 Query 243468 CCAGA--AC-AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || || || ||||| | || || | ||| | || || || || | Sbjct 29608535 CCTGAGGACGAAGCTCTCGGAGGAGCGCGTGAGGTCGATCGTGTGCGACGCGGTGGAGAT 29608476 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| | ||| || | |||||||| | || ||| | | | || |||||| |||||| Sbjct 29608475 CGAGAGGGAGTTTGTGTGCGACGCGCTCCCGTGCGCGTTGGTGGGGATGAACCGTGAACT 29608416 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| | ||||| || || ||||| || || | | || |||||||| || | ||| Sbjct 29608415 GATGAGTCAGTATATTGAGTTCGTGGCGGATAGGTTGTTGGGTGCGCTTGGGTACGGGAA 29608356 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||| ||| || |||| | |||||| | || |||||||| |||||||| Sbjct 29608355 GGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTCAGGGGAAAAC 29608296 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||||||||| ||| | || |||||||||| Sbjct 29608295 TAACTTCTTCGAGAAGAGGGTTGGTGATTATCA 29608263 Score = 91.5 bits (100), Expect = 3e-13 Identities = 269/415 (65%), Gaps = 0/415 (0%) Strand=Plus/Minus Query 149077 CATTGTGAACTTTCGCTTCGCAGAATTTTCTGATCAGAACCGGGAACACGTGACCGTTAT 149136 |||| | | ||||||||||| ||| | || |||||| | || | ||| ||| || | Sbjct 15977857 CATTATTAGCTTTCGCTTCGTGGAACCTCCTCATCAGAGCAGGAAGCACATGAGAATTCT 15977798 Query 149137 TAAGATCGTATCGGTCATTTGGACCGCTGAGATTCGTCGGCATGACTGAGACGAAATTAC 149196 | | | | || || ||||| ||||||||||||||| | |||| || | Sbjct 15977797 CCGGGTGGAAATTATCGTTCTGACCGTAGAGATTCGTCGGCATACCGGAGATCGCATCCC 15977738 Query 149197 ATCCATATTGTTTTCTGTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGT 149256 | || || | ||| || | |||||||| ||| || ||||| || || ||||||| Sbjct 15977737 ACTGATGCTGAACCCGGTACGCCTGACACATCTTGATCCCCGCGATCTTGGCGATCGCGT 15977678 Query 149257 ATGGTTTGTTAGTGGGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTGATAGGATTTT 149316 | | ||| ||||| ||||| ||||| | ||| | ||| || || | Sbjct 15977677 ACCACTCGTTGGTGGGCTCGAGTGGGCCTGTGAGGAGAGCTGATTCGGGTATGGGCTGAG 15977618 Query 149317 GAGCTTCTTTTGGGTAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACA 149376 |||| ||||||||| ||||| | ||||| || | |||||| || || ||| | Sbjct 15977617 GAGCGAATTTTGGGTAGATGCAGGAGGAGCCGAGGAAGAGGAGTTTCTTGACGCCGTGCG 15977558 Query 149377 TTTTGGACGCATGAATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCC 149436 | | | | || || || || ||||| ||| || || || || || ||| || Sbjct 15977557 TGTAAGCGGAGTGGATCACGTTGGTCTGGATCTGGAGGTTGACGGCGATGAAGTCGGCCG 15977498 Query 149437 CGAAGGAGTTGTTCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTA 149491 | ||| |||||| ||||| || || || ||||| || || ||||| | ||||| Sbjct 15977497 GGTAGGTGTTGTTGGCGTGGATGCCGCCGACTTTGGCTGCGGCGAGGATGACGTA 15977443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102844037495750