Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq6 91.5 1e-13 seq2 87.8 1e-12 seq1473 84.2 2e-11 seq8 84.2 2e-11 seq5 82.4 5e-11 >seq3 Length=44396707 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| || || ||||| ||||| || ||||| |||||||| || ||| | | | | || Sbjct 19894124 TAAGACCAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGCAAGAGTACGCCCATC 19894183 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| | ||| || ||||| | ||||| | ||| ||||| ||||| || ||||| || Sbjct 19894184 TTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATACCCTCCTTATC 19894243 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| ||| ||| ||| | || || ||||| | | || || || || |||||||| Sbjct 19894244 CTGAATCTTGGCTTTAACATTGTCGATGGTATCTGAACTCTCCACCTCCAAAGTAATGGT 19894303 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || |||| ||| || ||||| || |||||| Sbjct 19894304 TTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 19894337 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| ||||| || ||||||||||| || |||| |||| Sbjct 19893897 AAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCAGCCAGTGTTCTGCCGTCC 19893956 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| || || || || | || | | ||| ||||| ||||| ||||||||||| Sbjct 19893957 TCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCT 19894016 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||||| || ||| | |||||||| || | | || || || | || ||||| Sbjct 19894017 TGGATCTTTGC-CTTGACATTGTCTATAGTGTCTGAACTCTCCACCTCCAGAGTGATGGT 19894075 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || || ||||| |||||| Sbjct 19894076 CTTCCCGGTCAGTGTCTTAACGAAAATCTGCATA 19894109 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | ||| || || || ||||| || || || |||||||||||| Sbjct 19894338 CCACCACGGAGCCTGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCC 19894397 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | || || || ||| | || | | || || || ||| Sbjct 19894398 AGGGTTCTGCCGTCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGA 19894457 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||| ||| ||| || | || || || ||| ||||| || Sbjct 19894458 ATGCCTTCCTTATCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGTTTTCCACC 19894517 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 19894518 TCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTAACGAAGATCTGCAT 19894564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006 |||| || |||| | ||| || |||||||| || || || || || ||||||||||| | Sbjct 19911700 TGCCTCCACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATCTG 19911759 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 | || | | | || || | |||||||||||| | || | ||| || ||||| | Sbjct 19911760 CCAAGG-TGCGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGT 19911818 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 || || || ||||| || |||||| || || | || ||||| ||| | || Sbjct 19911819 GGGATCCCCTCCTTATCTTGGATTTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCC 19911878 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || ||||| || || || || || || ||||| || ||||| Sbjct 19911879 ACCTCTAGAGTGATGGTCTTCCCGGTAAGTGTCTTAACAAAGATCTGCAT 19911928 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || ||||| || || || || || ||||||||||| Sbjct 21554255 TGCCACCACGTAGACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAG 21554314 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || | ||| || || || | ||||| | ||| ||||| || Sbjct 21554315 CAAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTG 21554374 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || ||||| || ||| ||| || | || || |||||| | || | Sbjct 21554375 GGATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCA 21554434 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || ||||||| || || ||||||||||||||| Sbjct 21554435 CCTCCAAAGTGATAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCATA 21554484 >seq6 Length=32494073 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| || ||||| ||||||||||| |||| | | | | ||| Sbjct 7251161 AAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGCGAGAGTACGCCCATCT 7251220 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || || || | ||||| | ||| |||||| ||||| ||||||||||| Sbjct 7251221 TCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 7251280 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || || | || || || ||| | || || || || ||| | || Sbjct 7251281 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTACTAGTC 7251340 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || ||||| |||||| Sbjct 7251341 TTCCCGGTGAGTGTCTTAACGAAAATCTGCATA 7251373 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023 || || || || || ||||| || || || |||||||| || || || | | | || Sbjct 7250933 AAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGCCAAGG-TGCGACCATC 7250991 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 | | |||||||||||| | || | |||||| ||||| ||||| || |||||||| Sbjct 7250992 CTAAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 7251051 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 |||||| ||| || | || || || ||| | ||||| |||| || ||||| Sbjct 7251052 CTGAATTTTAGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCTACCTCTAGAGTGATGGT 7251111 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || ||||| || |||||| Sbjct 7251112 CTTGCCCGTGAGAGTCTTGACAAAGATCTGCATA 7251145 >seq2 Length=44367670 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| || || || ||||||||||| ||| | | | || Sbjct 25764016 AAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCC 25764075 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| ||||| ||| | ||||| | ||| ||||| ||||| || || ||||| Sbjct 25764076 TCGAGTTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCT 25764135 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| ||| | || || || ||| | || || || || || || || Sbjct 25764136 TGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATAGTC 25764195 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||||| |||||||| |||||| Sbjct 25764196 TTTCCCGTCAATGTTTTAACAAAAATCTGCATA 25764228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||| ||| || | ||| ||||||| | || Sbjct 7316023 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGCGTCCTCCCGTCTTCCAGCTGC 7315964 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| ||||| || || ||| || ||||||||||| || ||| Sbjct 7315963 TTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTG 7315904 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || ||| || |||| ||| || || || || || Sbjct 7315903 GCTTTGACATTGTCGATCGTGTCTGATGATTCGACCTCTAGGGTTATCGTCTTCCCCGTT 7315844 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| ||||| || ||||| || Sbjct 7315843 AGGGTTTTCACAAAGATCTGCATTTT 7315818 >seq1473 Length=1387316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 14976 AAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTT 15035 |||||| || || ||||| ||||| |||| || | | | || || | |||||| Sbjct 1201389 AAGGGTCGACTCCTTTTGGATGTTATAATATGCAAGCCTGCGACCATCCTCGAGTTGTTT 1201448 Query 15036 GCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCT 15095 ||| | | || | | |||| ||| || || ||||||||||| |||||| | Sbjct 1201449 ACCATCAAACATGATTCTCTGTAGGTTTGGGGGGATCCCTTCCTTGTCTTGAATTTTTGT 1201508 Query 15096 TTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAG 15155 |||||| | || | | | ||| | || || |||||||||||||||||||| || | Sbjct 1201509 CTTTACATTCTCAACAATGTCGAAGCTGTCAACTTCTAAGGTAATGGTTTTACCGGTGAA 1201568 Query 15156 AGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| |||||||| Sbjct 1201569 CGTTTTCACAAATATTTGCAT 1201589 >seq8 Length=44809562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || || || || ||||||||||| | | | || | || || Sbjct 30326868 AACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTC 30326809 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| |||||| | || | | ||||||||| || || ||||||||||| Sbjct 30326808 AAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTG 30326749 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || || || || | || || || ||||| || || || Sbjct 30326748 AATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTT 30326689 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| ||| || ||||| ||||||||| Sbjct 30326688 GCCTGTCAAAGTCTTGACAAAGATTTGCATA 30326658 >seq5 Length=39062406 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || ||||| || || || || || ||||||||||| Sbjct 24281655 TGCCACCACGTAGACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAG 24281596 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || | ||| || || || | ||||| | ||| ||||| || Sbjct 24281595 CAAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTG 24281536 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || ||||| || ||| ||| || | || || |||||| | || | Sbjct 24281535 GGATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCA 24281476 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || ||||||| || || ||||||||||||||| Sbjct 24281475 CCTCCAAAGTGATAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCATA 24281426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357380914705325