Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq3 273 3e-68 seq4 187 3e-42 seq8 89.7 6e-13 >seq3 Length=44396707 Score = 273 bits (302), Expect = 3e-68 Identities = 447/638 (70%), Gaps = 7/638 (1%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTG---A 6319 |||| | | || | ||| || || || |||| |||| || ||||||||| || || | Sbjct 24110541 AGAGTGCTTCCACGTGGTAAAACCTCCTCAGTGAATATAATGTTTTCATGAGGCTGCTGA 24110482 Query 6320 TCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAAC 6379 ||| | |||||||| | || | |||||| || || || || || || || ||||| Sbjct 24110481 TCCTGAGCCGCCATCCAAGTGCGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGAAA 24110422 Query 6380 GTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTA 6439 || || || || ||||| |||||||| | || ||||| |||| ||| |||| || | Sbjct 24110421 GTTTC-AAGTCCGGATCTTCCGCTGCACAAATTTCTTGGGAAATGAAGCCATAGGCACAT 24110363 Query 6440 AGGTTAAGTGCAAGACCAA-TAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAAC 6498 ||||| | || ||||| | || ||| | || | ||| | ||| | || || || Sbjct 24110362 AGGTTCAAAGCTAGACCTACTATTACAAGAGC-ACTCATCCTTAAACCAGTTACTGGTAC 24110304 Query 6499 AAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGA 6558 ||| | ||||||||| |||| |||| | |||||| || || |||||||| | || Sbjct 24110303 AAATAACATAAAGAATTGTAACCAATGTTTATTGGAAAAAGCAGCCCCAAAGATTCGTGA 24110244 Query 6559 CCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGC 6618 ||| || || ||||| |||||||| ||||| || || || |||| | || | ||| || Sbjct 24110243 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAATTGGGTTAAAAGC 24110184 Query 6619 CTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTAT-TCTCTACAGTAGCACCGT 6677 || |||||| ||||||| |||| | ||| || | |||||||||||||| | Sbjct 24110183 ACATAATTTATTTGCACCATCACCATTTTCAGATAAAAAATATTTCTACAGTAGCACCAT 24110124 Query 6678 GAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGT 6737 |||||| || | || || | || | | ||| || | |||| || |||||| | | Sbjct 24110123 CAATAGCGCATAACAGAGCCGCGCCCAGTACACCGGCAATTCCCAGCAAATGAAATGAAT 24110064 Query 6738 TGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACAC 6797 | || | ||| || || || || || | ||||| | ||| || ||||| || || |||| Sbjct 24110063 TCAGTGCCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 24110004 Query 6798 CAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACA 6857 |||| ||| ||||||||||| || || || || ||||| || |||||||| || | Sbjct 24110003 CAAAACTAGGCACAAAGAACCAATCAGATTGACCTAGTGGATAAATTAGAAAGACTGAAA 24109944 Query 6858 CAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTG 6895 |||| |||||||| |||||||| || | ||||| |||| Sbjct 24109943 CAAAAACAGCAATTGGACCAGAGAATGTGATTGTATTG 24109906 >seq4 Length=32756842 Score = 187 bits (206), Expect = 3e-42 Identities = 210/280 (75%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 7914 CAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCA 7973 |||| |||| |||||| ||||| || || | || || || |||||||| || || | || Sbjct 25314955 CAAG-GAACTATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACA 25315013 Query 7974 TGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACG 8033 |||| || |||||||| || ||||||||||| ||||| || |||| ||| ||||||| | Sbjct 25315014 TGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGAAAG 25315073 Query 8034 TACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGA 8093 |||||||||| || ||||||||| | | ||| ||| |||||||| | || |||| | Sbjct 25315074 TACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGATCA 25315133 Query 8094 GGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCA 8153 ||| |||||| | ||||| | ||| || ||||| ||| ||||| |||| | Sbjct 25315134 AGAAAACAGCAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGACGTA 25315193 Query 8154 TACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 |||| |||| | || ||||||||| |||||| |||| || Sbjct 25315194 TACCCAGACAGAAACTAAGTTCCCAATCACGATCCATATA 25315233 >seq8 Length=44809562 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| |||| || |||| ||| || || | |||||||||||||| ||||| Sbjct 31672887 GTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCAGCAATCTGGTCATCATCGAGGAAA 31672946 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| |||||||| || || || | | Sbjct 31672947 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCTGCACAGCTGGAGCAAGAA 31673006 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | ||| || || ||||| |||||||| || || | ||| Sbjct 31673007 CCAGCACGGCAAGAGTAAGGCAAGTCGATTCCGGCTTCCTCAGCAGCGTCGAGGACGTAG 31673066 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 31673067 ACGTCGTCGTCGCACTCAA 31673085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622105008654800