Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 >seq6 Length=32494073 Score = 123 bits (136), Expect = 3e-23 Identities = 189/269 (70%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| | ||||| || || || |||||| || || |||||||| || Sbjct 29608565 GTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 29608624 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| |||| || || || |||||||| ||||| ||||| || Sbjct 29608625 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAATATCCCTTCCACGCA 29608684 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || ||||| | | | ||||||||||| | || | || | |||| ||| || Sbjct 29608685 AGCAAACGCCACGATCCTCTCGGCAAAGGCCTGAGA---TCCGTCGATCCACGTCAAGGC 29608741 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| |||| |||||| ||||| | | | | Sbjct 29608742 CCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGATCCCT 29608801 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTA 127799 ||| ||| |||||||| |||||| Sbjct 29608802 CTCTCTATTATCCTTGATGTAAGTATCTA 29608830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487682802200