Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 187 4e-42 seq8 168 1e-36 >seq6 Length=32494073 Score = 187 bits (206), Expect = 4e-42 Identities = 416/618 (67%), Gaps = 10/618 (2%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| ||||| || || |||| | || || | ||||| | | || || | Sbjct 29608279 TCTTCTCGAAGAAGTTAGTTTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGAT 29608338 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | || || || ||| |||||| || ||||| || | Sbjct 29608339 TCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCCAACAACCTATCCGCCACGAACT 29608398 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | || || || |||| | |||| ||| ||||||| || | | ||||| ||||| || Sbjct 29608399 CAATATACTGACTCATCAGTTCACGGTTCATCCCCACCAACGCGCACGGG-AGCGCGTCG 29608457 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| ||||||| |||| ||||| ||||| ||| ||| ||| | || || || | | Sbjct 29608458 CACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCTCACGCGCTCCTCC 29608517 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| | | | || | | |||| ||||| |||||||||||||| ||| Sbjct 29608518 GAGAGCTTCGTCCTCAGGAGGGAGTAGATCAGG---CACGCGAAGTCGCAGTGCAGGCCC 29608574 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| | ||||| | ||||||||| | | |||| |||||||||| ||||||| || Sbjct 29608575 TCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTCTTC 29608634 Query 160007 AGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || || | ||| |||| |||| || || ||||| |||||| |||||||| Sbjct 29608635 AGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAATATCCCTTCCACGCAAGCAAACGC 29608693 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| |||||| ||| |||| | | | | | ||||| | |||||||| || Sbjct 29608694 CACGATCCTCTCGGCAA---AGGCCTGAGATCCGTCGATCCACGTCAAGGCCCATTGGGC 29608750 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| |||| ||| || || ||||| ||| || | ||| ||| | Sbjct 29608751 CTTCTTCGCGACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGATCCCTCTCTCTATT 29608810 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 ||||||||| |||| | | ||| |||||| || | ||| | || ||||| || Sbjct 29608811 ATCCTTGATGTAAGTATCTAACAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATCGC 29608870 Query 160246 CATCTGAAAGTTGTAGAA 160263 ||||| || |||||| Sbjct 29608871 GATCTGGAACCCGTAGAA 29608888 >seq8 Length=44809562 Score = 168 bits (186), Expect = 1e-36 Identities = 547/838 (65%), Gaps = 21/838 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| |||||||| || |||| | || || | ||||| | | || || | Sbjct 36832854 TCTTCTCGAAGAAGTTGGTTTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGAT 36832913 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || | | || |||| | || || ||| ||| | ||| || |||||||| | Sbjct 36832914 TCGCCGCACCGTACACCTTCCCGTACCCAAGCGCCCCCAAAAGCCTATCCGCCACAAACT 36832973 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 |||| || || |||| |||| ||| ||||||| || | | |||| ||||| || Sbjct 36832974 CGATATACTGACTCATCAAATCACGGTTCATCCCCACCAACGCGCACGGA-AGCGCGTCG 36833032 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| ||||||| |||| ||||| || || ||| ||| ||| | || || || | | Sbjct 36833033 CACACAAACTCCCTCTCGATCTCCACGGCGTCGCACACGATCGACTTCACGCGCTCCTCC 36833092 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| | | | || | | |||| ||||| || ||||||||||| || Sbjct 36833093 GTGAGCTTCGTCCTCAGGAGGGTGTAGATCAGG---CACGCGAAATCGCAGTGCAGGCCT 36833149 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| | ||||| | ||||||||| | | | | || ||||||| ||| ||| || Sbjct 36833150 TCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCAGGCATGAGCCCTCGCTTCTTC 36833209 Query 160007 AGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || || | ||| |||| |||| || || ||||| || ||| ||| || || Sbjct 36833210 AGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAATATCCCTTCGACGCACGCGAAGGC 36833268 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| |||||| ||||| | | || ||| | ||||| | ||||||||| || Sbjct 36833269 CACGATCCTCTCGGCAAAA---GTCTGGGACCCATCGATCCACGTCATGGCCCATTGGGC 36833325 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| |||| ||| || ||| ||||| ||| || | |||| ||||||| Sbjct 36833326 CTTCTTCGCGACGCAGGGGATGGTCTCGATCGCGCGGAAGAGATGGTCCCGCTCCTTGTT 36833385 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 |||||||| || | | ||| |||||| || | ||| | || ||||| || Sbjct 36833386 GTCCTTGATGTACGTGTCTAACAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATCGC 36833445 Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAACCTTT 160304 ||||| || |||||| |||||| ||| ||| || || |||||| Sbjct 36833446 GATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGA-CCTGGACGTCGGACATGAACCGAG 36833504 Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364 | ||||| | || | ||||||| ||| || ||||| || | ||||| || Sbjct 36833505 AGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGA 36833564 Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT---GTGTCACGTCTTGGGCCA 160421 |||| || | ||| | | |||||| || ||||||| |||| ||| |||| | Sbjct 36833565 TGAAGTGGCGCTCTCCGTCGTTGAG---ATTCTCCCAGTCGCGTGT---GTCCTGGGAGA 36833618 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || || || || ||| |||| || |||| || | |||||||| ||||||| Sbjct 36833619 GGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGAT 36833676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795129904125200