Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 5e-11 seq2 82.4 5e-11 >seq3 Length=44396707 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| || | ||| || || || || || || || || Sbjct 19911929 GCCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 19911988 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | | |||| || | || || ||| |||| || || | |||||| |||| || Sbjct 19911989 AAGAGTTCTTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 19912048 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || ||| ||| | | | | ||||| | ||| ||||| Sbjct 19912049 AATACCCTCTTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCAC 19912108 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || ||||| || || || || ||||||||||| Sbjct 19912109 CTCCAAAGTAATAGTCTTTCCCGTCAACGTCTTGACAAAGATCTGCAT 19912156 >seq2 Length=44367670 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| || || ||||| | |||| |||||||| || ||| | || Sbjct 25764493 TCCTTCTGGATATTGTAGTCAGCCAAGGTCCTGCCATCTTCCAATTGCTTTCCGGCGAAG 25764552 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | |||||| || || || || ||||| ||| Sbjct 25764553 ATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTTGGCTTTAA-CGTT 25764611 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||||||||| || | || || || || || || | |||||| || Sbjct 25764612 GTCGATCGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCAC 25764671 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 25764672 GAAGATCTGCAT 25764683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347358825571985