Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 116 5e-21 seq4 116 5e-21 seq3 113 6e-20 seq8 107 2e-18 seq7 104 3e-17 >seq6 Length=32494073 Score = 116 bits (128), Expect = 5e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| ||| | || | || ||||| || || || || || |||||||| ||| || Sbjct 29608713 CCTTTGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCCGGTAGCT 29608654 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | ||||| |||||||| || |||||||| || ||| ||||||||||| Sbjct 29608653 TCTGCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACG 29608594 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||| ||||| | |||||||| || ||| Sbjct 29608593 AGCTGATCTCGAGAGACGAGGGCCTGCAC 29608565 >seq4 Length=32756842 Score = 116 bits (128), Expect = 5e-21 Identities = 301/451 (67%), Gaps = 16/451 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | ||| | || ||||| ||||| | | || ||||| Sbjct 20996484 CGGTCAAAACGGCCTGGTCTAAGCAAGGCAGAGTCAAGAATATCTGCTCTGTTGGTTGCA 20996425 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | | ||| |||| | || |||||||||||||||| ||||| ||||| | Sbjct 20996424 GCAACTACGATGACACCAGTGTTACCTT--CAAAACCATCCATCTCCGTCAAGAGCTGAT 20996367 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTC 16059 ||| || ||||| | ||||||||| || |||| || | | | |||| | | Sbjct 20996366 TAAGCGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTAC 20996310 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | || ||||| || ||||| | ||||| ||||| || ||||| || || | Sbjct 20996309 CAACAGCATCTATTTCATCCACAAAGACAATGCAGGGAGCGTTTTCCTTGGCCTTTTTGA 20996250 Query 16120 AGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 | ||||| || || |||| || || ||||| ||||||||||| ||||| | | | Sbjct 20996249 AAAGATCACG--GACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCC 20996192 Query 16178 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 | | |||| | ||| || ||| || |||||| |||||||| || || || || | Sbjct 20996191 CG-AGATTGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAGGAGGGTTT 20996133 Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAA 16296 | |||||||| || ||| | ||||| ||||| || || || ||| || Sbjct 20996132 TCCCCGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATTCGAGCACCAACCGCAG 20996073 Query 16297 AGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| ||||| ||||| Sbjct 20996072 TGAACCTCTCAGGCTTCTTCAGAAACTCCAC 20996042 >seq3 Length=44396707 Score = 113 bits (124), Expect = 6e-20 Identities = 284/423 (67%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| ||||| || | || | ||||| |||| | || ||| Sbjct 13017452 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTT--CAA 13017395 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | |||||||| | ||| || || | ||||||||| || Sbjct 13017394 ACCCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGCTCTCTTTCATCATTACCT---C 13017338 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || |||||||||||||| | ||||| |||| Sbjct 13017337 CACCAATTCCTGTTCCTCTTTGCCTACCAACAGCATCAATCTCATCTACAAAGACAATGC 13017278 Query 16093 ATGG-TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || | | | | | | ||| ||| ||||| || || | ||| || ||||| Sbjct 13017277 AAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGATCACGGACTCTGGAGGCACCAACACCG 13017219 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | ||| | || | || ||| || ||| || |||||| Sbjct 13017218 ACAAACATCTCAACAAACTCAGATCCGG-AGATGGAGAAGAACGGCACACCAGCTTCACC 13017160 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| ||| || | || ||||| || ||||| || ||| || || |||| Sbjct 13017159 GGCAATAGCTTTCGCCAATAGCGTCTTTCCAGTACCAGGAGGACCAATAAGCAGAACACC 13017100 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || ||| ||| ||| | || | | |||||||| | ||| ||||| ||||| | Sbjct 13017099 TTTCGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCAC 13017040 Query 16331 CTC 16333 ||| Sbjct 13017039 CTC 13017037 >seq8 Length=44809562 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 ||||| || | ||||| |||| |||| | ||| ||| | | ||||| ||| | Sbjct 36833331 AAGAAGGCCCAATGGGCCATGACGTGGATCGATGG---GTCCCAGACTTTTGCCGAGAGG 36833275 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || | || || ||||| || || || || |||||||| ||| ||||||| | || | Sbjct 36833274 ATCGTGGCCTTCGCGTGCGTCGAAGGGATATTCTTCTCCGGTAGCTTCTGCTCGATCTTC 36833215 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||| ||||||||||| |||||||| || | ||||||||||||||| ||||| | Sbjct 36833214 TGGCTGAAGAAGCGAGGGCTCATGCCTGGGTTGACCTTCTCCAACGAGCTGATCTCGAGA 36833155 Query 102306 GACGAGGGACTCCAC 102320 ||||| || || ||| Sbjct 36833154 GACGAAGGCCTGCAC 36833140 Score = 104 bits (114), Expect = 3e-17 Identities = 296/449 (66%), Gaps = 12/449 (3%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | || ||||| ||||| | | ||| ||||| Sbjct 32327842 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCTCTATTGGTTGCA 32327783 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| || ||| || |||| ||||| ||||||||||| ||||| ||||| Sbjct 32327782 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 32327726 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 16059 |||| || || || | |||||||| || | | | |||| | | ||| | | Sbjct 32327725 TTAAGCGTCTGCTCTCTCTCATCATTACCT--CCACCGATTCCAGTTCCCCTCTGCCTAC 32327668 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | || ||||||||||| || | || || ||||| || ||| || || || | Sbjct 32327667 CAACAGCATCAATCTCGTCCACAAAAACAATGCACGGAGCATTCTCCTTGGCCTTTTTGA 32327608 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | ||||| || || | | || || ||||| ||||||||||| ||||| | | | | Sbjct 32327607 AAAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG 32327548 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | || | || ||| || ||| | |||||| |||||||| || | || || ||| Sbjct 32327547 -AGATGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCCTTCGCCAAGAGGGTTTTA 32327489 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 16298 || ||||| || ||| | || ||| ||||| || ||| || ||| || | Sbjct 32327488 CCAGTACCAGGAGGACCAACAAGAAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTG 32327429 Query 16299 TATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | |||||||| | ||| ||||| ||||| Sbjct 32327428 AACCTCTCAGGCTTCTTCAGAAACTCCAC 32327400 >seq7 Length=41685129 Score = 104 bits (114), Expect = 3e-17 Identities = 217/318 (68%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| ||||| ||||| ||||| || || |||| ||||||||| || | Sbjct 18320017 AACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 18319960 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | ||| ||||| | | ||| | ||||| ||||||||||||||||| || || || | Sbjct 18319959 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAAAACAATAC 18319900 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 | || || | ||| ||||| | ||||| || || || | || || ||||| Sbjct 18319899 AAGGCGCCTTGGCCTTAGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCAACACC 18319842 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||| | ||| ||||| | | || | || || ||| || || || ||| || Sbjct 18319841 GACAAAAAGCTCAACAAACTCAGAAGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCTCC 18319782 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || | ||||| || | ||| |||||||| || || || || | ||||| || Sbjct 18319781 AGCCACGGCTCTAGCTAAAAGCGTCTTACCAGTCCCAGGAGGCCCAACAAGGAGACACCC 18319722 Query 16271 TCGTGGAATCTTGGCGCC 16288 | |||||||| ||||| Sbjct 18319721 TTTAGGAATCTTAGCGCC 18319704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722652632400