Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 109 6e-19 seq4 109 6e-19 seq3 87.8 2e-12 seq7 84.2 3e-11 >seq8 Length=44809562 Score = 109 bits (120), Expect = 6e-19 Identities = 296/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | ||| ||||||||||| | | || || || Sbjct 32327842 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCTCTATTGGTTGCA 32327783 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || | ||||| || Sbjct 32327782 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 32327723 Query 11623 ATCGTCTGTTCACGCTCATCGTTGG----AGGGCATACCACCTGCCGAACGCTTCTTACC 11678 | |||||| || | |||||| || | | || ||| | || | || | |||| Sbjct 32327722 AGCGTCTGCTCTCTCTCATCATTACCTCCACCG-ATTCCAGTTCCC---CTCTGCCTACC 32327667 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| |||||||| || | || || || ||||| || | |||| || ||| Sbjct 32327666 AACAGCATCAATCTCGTCCACAAAAACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAA 32327607 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 ||| ||||| || | | || |||||||| || ||||||||||| || | | | || Sbjct 32327606 AAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGA 32327547 Query 11799 ACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 | || | ||| || ||| | |||||||| ||||| || | ||| || |||| Sbjct 32327546 G-ATGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCCTTCGCCAAGAGGGTTTTAC 32327488 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT 11917 | |||||||| | |||| | |||||| | || |||||| |||||| || | Sbjct 32327487 CAGTACCAGGAGGACCAACAAGAAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGA 32327428 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | | |||||||||||| || || ||||| Sbjct 32327427 ACCTCTCAGGCTTCTTCAGAAACTCCAC 32327400 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || | ||||| ||||| || |||| | ||||||||||| ||| Sbjct 36833141 TGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCAGGCATGAGCCCT 36833200 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || || || || ||||| || || || || || Sbjct 36833201 CGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAATATCCCTTCGACGCAC 36833260 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||||| || | | | ||| ||||||| | ||| |||| |||| | | ||||| Sbjct 36833261 GCGAAGGCCACGATCCTCTCGGCAAAAGTCTGGGACCCATCGATCCACGTCATGGCCCAT 36833320 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 | |||||| | | | |||||||| || | ||| || Sbjct 36833321 TGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATCGC 36833358 >seq4 Length=32756842 Score = 109 bits (120), Expect = 6e-19 Identities = 330/499 (66%), Gaps = 22/499 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | ||| ||||||||||| | | ||| || || Sbjct 20996484 CGGTCAAAACGGCCTGGTCTAAGCAAGGCAGAGTCAAGAATATCTGCTCTGTTGGTTGCA 20996425 Query 11563 GCAATGACTACAATG---CCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 |||| |||| ||| ||||| | | || ||||| ||||| || || | ||||| Sbjct 20996424 GCAA---CTACGATGACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGA 20996368 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAA--CGCTT--C 11673 || | ||||||||| | ||||| || | | ||||| | ||| | ||| | Sbjct 20996367 TTAAGCGTCTGTTCTCTTTCATCATTA-----CCT-CCACCAATTCCGGTTCCTCTTTGC 20996314 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 |||| ||||| || || ||||| | || || || || || ||| | |||| | Sbjct 20996313 CTACCAACAGCATCTATTTCATCCACAAAGACAATGCAGGGAGCGTTTTCCTTGGCCTTT 20996254 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 | |||||| ||||| || | || |||||||| || ||||||||||| || | | Sbjct 20996253 TTGAAAAGATCACGGACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAC 20996194 Query 11794 GCAGAACACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 | || | |||| ||| || ||| || |||||||| ||||| || ||||| || Sbjct 20996193 CCCGAG-ATTGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAGGAGGGT 20996135 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCC 11912 || ||||||||||| | |||| | || || | || ||||| |||||| | Sbjct 20996134 TTTCCCCGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATTCGAGCACCAACCGC 20996075 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCTTGGCGG 11971 | | | | |||||||||||| || || ||||| | ||| | ||| || | |||||| Sbjct 20996074 AGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAG-TCTTGCTTGGCTT 20996016 Query 11972 AGTCGATACCCTCAACATC 11990 |||| || ||||||| Sbjct 20996015 CATCGACTCCAGCAACATC 20995997 >seq3 Length=44396707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 296/454 (65%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | | | |||| |||||||| || | | || || || Sbjct 13017485 CGGTCAAACCGTCCTGGCCTCAACAAAGCAGAGTCAAGAATGTCTGCTCTATTGGTTGCA 13017426 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || || |||||||| Sbjct 13017425 GCAACAACGATGATACCAGTGTTACCTTCAAACCCATCCATCTCAGTTAGCAGCTGGTTC 13017366 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | ||||| || | ||||| || | | |||| | | | | ||| | |||| Sbjct 13017365 AAAGTCTGCTCTCTTTCATCATT--ACCTCC-ACCAATTCCTGTTCCTCTTTGCCTACCA 13017309 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| ||||||||||| | || || || || || ||| | |||| | |||| Sbjct 13017308 ACAGCATCAATCTCATCTACAAAGACAATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA 13017249 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || ||||| || | || |||||||| || ||||||||||| || | | | || Sbjct 13017248 AGATCACGGACTCTGGAGGCACCAACACCGACAAACATCTCAACAAACTCAGATCCGGAG 13017189 Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | || | ||| || ||| || ||||| || || ||| || | || ||||| || Sbjct 13017188 -ATGGAGAAGAACGGCACACCAGCTTCACCGGCAATAGCTTTCGCCAATAGCGTCTTTCC 13017130 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 |||||||| | |||| || || | || |||||| ||||||| | || | | Sbjct 13017129 AGTACCAGGAGGACCAATAAGCAGAACACCTTTCGGGATCCGGGCACCAACTGCAGTGAA 13017070 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | |||||||||||| || || ||||| | |||| Sbjct 13017069 CCTCTCAGGCTTCTTCAGAAACTCCACCACCTCC 13017036 >seq7 Length=41685129 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGTGTATTCCA 110338 ||| | ||||||||| |||||||||||||||| ||| || | || | | |||||||| | Sbjct 5827676 GGGTAAAGCAATAGATGCAAGATTGCACACAGCAGTTTC-TGTTGGACTTGTGTATTCGA 5827618 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGG 110398 ||||| || || || |||||| ||||||| ||||| || | |||||| ||| Sbjct 5827617 TGATTTCAGTGCATAAATTGGAAGACTTAATGGTACCCAGATTTTGCTGATTGCTTTTCC 5827558 Query 110399 AGTTGCATGCATCCT 110413 ||| |||| ||||| Sbjct 5827557 TGTTACATGAATCCT 5827543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957263201000