Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq7 113 5e-20 seq3 111 2e-19 seq8 107 2e-18 seq6 104 3e-17 >seq4 Length=32756842 Score = 123 bits (136), Expect = 3e-23 Identities = 298/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | ||| | || ||||| ||||| | | || || || Sbjct 20996484 CGGTCAAAACGGCCTGGTCTAAGCAAGGCAGAGTCAAGAATATCTGCTCTGTTGGTTGCA 20996425 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | | ||| || | | ||||||||||||||||| ||||| || || ||| Sbjct 20996424 GCAACTACGATGACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGATTA 20996365 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 20996364 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTTTGCCTACCA 20996308 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | |||||||| || || ||||| ||| ||| || Sbjct 20996307 ACAGCATCTATTTCATCCACAAAGACAATGCAGGGAGCGTTTTCCTTGGCCTTTTTGAAA 20996248 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || |||||| || || ||||| ||||||||||| ||||| | | | | | Sbjct 20996247 AGATCACGGACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCG-A 20996189 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 |||| | ||| || ||| || |||||| |||||||| || || || || || || Sbjct 20996188 GATTGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAGGAGGGTTTTCCC 20996129 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 |||||| || ||| | ||||| |||| || || || ||| || | | Sbjct 20996128 CGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATTCGAGCACCAACCGCAGTGAA 20996069 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 20996068 CCTCTCAGGCTTCTTCAGAAACTCCAC 20996042 >seq7 Length=41685129 Score = 113 bits (124), Expect = 5e-20 Identities = 218/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| ||||| || || ||||| || || |||| ||||||||| || | Sbjct 18320017 AACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 18319960 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | ||| ||||| | | ||| | ||||| ||||||||||||||||| || ||||||| Sbjct 18319959 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAAAACAATAC 18319900 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || || | || | ||||| | ||| | ||| || || || ||||| | Sbjct 18319899 AAGGCGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACCGA 18319840 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||| | ||| ||||| | | || | || || ||| || || || ||| || | Sbjct 18319839 CAAAAAGCTCAACAAACTCAGAAGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCTCCAG 18319780 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 | | ||||| || | ||| |||||||| || || || || | |||| | ||||| Sbjct 18319779 CCACGGCTCTAGCTAAAAGCGTCTTACCAGTCCCAGGAGGCCCAACAAGGA-GACACCCT 18319721 Query 9580 GT-GGAATCTTGGCGCC 9595 | |||||||| ||||| Sbjct 18319720 TTAGGAATCTTAGCGCC 18319704 >seq3 Length=44396707 Score = 111 bits (122), Expect = 2e-19 Identities = 279/420 (66%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| || || || | || | ||||| || | | ||||| Sbjct 13017452 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 13017393 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || ||||| | ||| || || | ||||||||| || | Sbjct 13017392 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGCTCTCTTTCATCATTACCTCC---A 13017336 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| | || || |||||||||||||| | |||||||| || Sbjct 13017335 CCAATTCCTGTTCCTCTTTGCCTACCAACAGCATCAATCTCATCTACAAAGACAATGCAA 13017276 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || || || ||| | | || ||||| || || || ||| || ||||| ||| Sbjct 13017275 GGAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACTCTGGAGGCACCAACACCGACA 13017216 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | ||| | || | || ||| || ||| || |||||| || Sbjct 13017215 AACATCTCAACAAACTCAGATCCGG-AGATGGAGAAGAACGGCACACCAGCTTCACCGGC 13017157 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| ||| || | || ||||| || ||||| || ||| || || |||| Sbjct 13017156 AATAGCTTTCGCCAATAGCGTCTTTCCAGTACCAGGAGGACCAATAAGCAGAACACCTTT 13017097 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || ||| ||| ||| | || | | |||||||| | ||| ||||| ||||| | ||| Sbjct 13017096 CGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 13017037 >seq8 Length=44809562 Score = 107 bits (118), Expect = 2e-18 Identities = 295/446 (66%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | || ||||| ||||| | | ||| || || Sbjct 32327842 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCTCTATTGGTTGCA 32327783 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || ||| Sbjct 32327782 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 32327723 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || || || | |||||||| || || | | |||| | | ||| | || | Sbjct 32327722 AGCGTCTGCTCTCTCTCATCATTACCTC-CAC-CGATTCCAGTTCCCCTCTGCCTACCAA 32327665 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | ||||||||||| || | || ||||| || || ||| || ||| ||| || | Sbjct 32327664 CAGCATCAATCTCGTCCACAAAAACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAA 32327605 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || ||||| || || ||||| ||||||||||| ||||| | | | | | Sbjct 32327604 GATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AG 32327546 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || | || ||| || ||| | |||||| |||||||| || | || || ||||| Sbjct 32327545 ATGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCCTTCGCCAAGAGGGTTTTACCA 32327486 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9608 ||||| || ||| | || ||| |||| || ||| || ||| || | | Sbjct 32327485 GTACCAGGAGGACCAACAAGAAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAAC 32327426 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 32327425 CTCTCAGGCTTCTTCAGAAACTCCAC 32327400 >seq6 Length=32494073 Score = 104 bits (114), Expect = 3e-17 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| |||| || || || || || |||||| || || |||||||| || Sbjct 29608565 GTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 29608624 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| | || | |||||| ||||||||||| || || ||||| || Sbjct 29608625 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAATATCCCTTCCACGCA 29608684 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 |||||||| | | | |||||| |||| |||| | ||| | ||| ||| || Sbjct 29608685 AGCAAACGCCACGATCCTCTCGGCAAAGGCCTGAGA---TCCGTCGATCCACGTCAAGGC 29608741 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| ||||||||| Sbjct 29608742 CCATTGGGCCTTCTTC 29608757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962031235800