Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq1239 127 5e-25 >seq1239 Length=2566 Score = 127 bits (140), Expect = 5e-25 Identities = 807/1278 (63%), Gaps = 80/1278 (6%) Strand=Plus/Minus Query 32320 CGGATCCGCAACGTCCTGAAGAGCCGGCAGATCGGCGCGACCTGGTACTTCGCGCGCGAG 32379 ||||||||| | |||||||| || |||||||| ||||| |||||||| ||| Sbjct 2430 CGGATCCGCCATATCCTGAAGTCGCGCCAGATCGGGCTGACCTACTACTTCGCCGCCGAA 2371 Query 32380 GCGTTGCTCGACGCGCTGAACACAGGCCGCAATCAAATCTTCCTGTCGGCCAGCAAGGCA 32439 ||||| | ||||| || || || ||| || || |||||||| || ||| || Sbjct 2370 GCGTTCATGGACGCAGTGCTGACCGGGGACAACCAGATTTTCCTGTCCGCGAGCCGCGCC 2311 Query 32440 CAGGCGCACGTGTTCCGCCAGTACATCGTGCAGTTCGCGAAAGACGCGGTCGACGTCGAG 32499 ||| | | ||||||||| |||||||| |||||| | | |||| ||||| Sbjct 2310 CAGTCCGAAGTGTTCCGCAGCTACATCGTCGCGTTCGCCGCGCAATGGTTCGATATCGAG 2251 Query 32500 CTGAAGGGCGACCCGATCGTGCTGCCGAACGGTGCGACGCTGT-------ACTTC----- 32547 ||| ||| | || ||| | || || | | | || || ||| | Sbjct 2250 CTGTCCGGCAATCCCATCATCTTGAGCAAAGACGGCAAGCCGTGGGCGGAACTGCGGTTT 2191 Query 32548 CTCGGCACCAACGCGCGCACTGCGCAGAGCTACCACGGCAACCTGTATTTCGACGAGTAC 32607 ||| || ||| ||| |||||||||||||||||| || | || ||||||| Sbjct 2190 CTCTCGACGAACAGCAACACGGCGCAGAGCTACCACGGCCACGTCTACATCGACGAAGTG 2131 Query 32608 TTCTGGGTGCCGCGCTTCCAGGAGCTGCGCAAGGTCGCCTCCGGCATGGCGATTCACGAC 32667 |||||| | || |||||| |||||| | ||| ||| || ||||| || | Sbjct 2130 TTCTGGATCCCCAATTTCCAGAAGCTGCAGACGGTGGCCAGCGCGATGGCCTCGCATGCA 2071 Query 32668 CAGTGGCGGCAGACGTATTTCTCGACGCCGTCGAGCC-TCGCGCACGACGCTTATCCGTT 32726 ||||||| | ||| || ||||| ||||| | || | ||||| | || ||||||| Sbjct 2070 AAGTGGCGCCTGACCTACTTCTCCACGCCCA-GCGCGGTAACGCACCAGGCATATCCGTA 2012 Query 32727 CTGGTCGGGCAAGCTGTTC---AACCGTGGCCGACCGAAAGATCAGCACGTATCGATCGA 32783 |||| | ||| || |||| ||| | || | |||||| || || || Sbjct 2011 CTGGACCGGCGAGGAGTTCCGCAACAGCAAGCG-CGGAAAGA--AGGCCGGGCCG----- 1960 Query 32784 CATTTCGCA-CGCGGCGCTGGCC---GCGGGC-CGTTCGTGTCAGGACGGCCAGTGGCGC 32838 | | || || |||| | | || ||| |||| ||| | |||||| ||||||||| Sbjct 1959 --TGGCCCAGCGAAGCGCAGATCCATGCCGGCGCGTT-GTGCCCGGACGGGCAGTGGCGC 1903 Query 32839 CAGATCGTCACGGTCGAGGACGCCGTGCGCGGCGGTTGCAACAGCGGGGCGCGGCCGCTC 32898 || || ||||| | | |||||| | |||||| |||||| || Sbjct 1902 AAGGTCATCACGATTCAAGACGCCATCGCCGGCGGCTGCAAC---------------CTG 1858 Query 32899 TTCAATCTCGACCGGCTACGACTGGAATACAGCCCCGAGGAATACGCGAACCTGCTGCTG 32958 ||| | || || || || | ||||| ||| | ||| | || | ||| | || Sbjct 1857 TTCGACCTGGAGCGCCTGCAGCTGGAGTACGACGAAGAGCGCTTCGAACAGCTGTTCATG 1798 Query 32959 TGCCAGTTCATCGACGATTCGCTGTCGGTTTTCCCGCTGACGGTGTTGCAGCCGTGCATG 33018 ||| ||||||||||| | | | | | ||| | |||| | || ||| ||| Sbjct 1797 TGCAAGTTCATCGACAGCACCCAGGCTGCATTCGCCTTGACCGACCTGGAGCGCTGCTAT 1738 Query 33019 GTCGATACCTGGGAGGTGTGGGACGACTTCAAGCC--ACTGTACCTGCGCCCGTTCGGCG 33076 ||| || || | ||| |||| | | || || | || ||| ||||||| | Sbjct 1737 TCCGA---CTTGGGCCTATGGACTGACTACGACCCGGACAG--CCCGCGGCCGTTCGACA 1683 Query 33077 ACGAGGAGGTCTGGATCGGCTACGACCC--GTCGCATACGGG-CGACAGCGCCGGCTGCG 33133 || ||||||| |||| || ||||| |||| | || | |||| ||| || |||| Sbjct 1682 ACCGCCCGGTCTGGCTCGGGTATGACCCCAGTCGAACCCGCGACGAC-GCGACG--TGCG 1626 Query 33134 TGGTGATTGCGCCGCCGAAGCGTCCGGGCGGGAAGTTCCGCGTGCTCGAGCGGTTCCAGT 33193 | || |||| ||||| | |||||||| |||||||| | || ||| | | | Sbjct 1625 TTGTCGTTGCCCCGCCCCTGGAGCCGGGCGGCAAGTTCCGAATCCTGGAGAAGCACAGCT 1566 Query 33194 GGCACGGTTTGGACTTCG---AGGCG-CAGGCCGCGCAAATCGAAGCGCTGACGCG-GCG 33248 ||| || ||| ||| | || ||||| ||| ||||| |||| ||| ||| Sbjct 1565 GGCGGGG----GACGTCGTTCACGCATCAGGCAAAGCAGATCGAGAAGCTGT-GCGAGCG 1511 Query 33249 CTATCGCGTGACCTACATCGGCATTGACACGACCGGGATCGGGCAGGGCGTGTATCAGCT 33308 || ||| |||||||||| |||| ||||| |||| | || |||| | || Sbjct 1510 CTTCAACGTCCAGCACATCGGCATCGACATTACCGGCGTCGGTTACGGGGTGTTCGACCT 1451 Query 33309 CGTCACGAAGTTTTTCCCGGCCGCGACGCCGTTCCACTACTCGGTGGAAATCAAGACCGC 33368 || | | || ||||| || || ||| | |||||| |||| |||| || Sbjct 1450 GGTGAAAGACTTCTTCCCCCGGGCTACTCCGATTCACTACAGCCTGGAGGCGAAGAATGC 1391 Query 33369 GCTGGTGATGAAGGCGCAGAACGTGATCC---GCAAGGGTCGGCTCGAGTTCGACGCCGG 33425 |||||| | ||||| ||| ||||||||| ||||| || |||| | || ||||| Sbjct 1390 CCTGGTGCTCAAGGCCCAGGACGTGATCCAGGGCAAG---CGCATCGAATGGGATGCCGG 1334 Query 33426 CTGGAACGATCTCGCCGCGTCATTCATGGCGATCAAGAAAACCATCACGCCCAGCGGCCT 33485 |||| ||| |||| ||| | ||| || |||||||| || |||| |||||||||| Sbjct 1333 TTGGACCGAGGTCGCGGCGGCGTTCCTGTCGATCAAGCGCGGCACCACGGCCAGCGGCCT 1274 Query 33486 GCAGGTCACGTACAAGGCGAGCCGCTCGGAAGAAGCGAGCCACGGCGATCTCGCCTGGGC 33545 | | || |||| ||| | | || | | | |||| | ||| | |||||| | Sbjct 1273 ---GATTACCTACAGCGCGTCTAGGACTGAGGCAACCGGCCATGCCGACGTGGCCTGGTC 1217 Query 33546 GTGCATGCACGCGCTGGC 33563 | |||||| |||||||| Sbjct 1216 GATCATGCATGCGCTGGC 1199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119030002581420