Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3 279 6e-70 seq4 141 1e-28 seq8 116 5e-21 seq2413 105 8e-18 seq6 91.5 2e-13 seq1 82.4 9e-11 >seq3 Length=44396707 Score = 279 bits (308), Expect = 6e-70 Identities = 438/623 (70%), Gaps = 7/623 (1%) Strand=Plus/Plus Query 181804 CAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCC 181863 |||| | || | || || ||||| |||||||| || || || || ||||| || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 181864 TCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTT 181923 || || ||||| ||||||||||| ||| ||||| ||||| ||||| || || || || Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 181924 CCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGT 181983 | | ||||| |||| || |||||||||||| | || ||| | || ||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 181984 TGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATAC 182043 ||| ||| | ||||| | || | | | || ||| | |||| || || || |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 182044 TCTGTATC--AAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAA 182101 | | |||| || | ||||| ||||||| || || || | ||| ||||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 182102 GAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCG 182161 |||||||| ||||||||||| || || |||||||| ||||| | ||||| || ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 182162 TTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGG 182221 ||| |||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 182222 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCC 182281 | ||| | | | || | ||||| ||| | ||||| |||| |||| ||| | ||| Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 182282 CAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTC 182341 |||||||| | ||| | ||||| || || || || || |||||||| || || ||||| Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTT 24110443 Query 182342 TTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGAT---CAACCACATGAGAACTTT 182398 || || |||||| | || | ||| | || | ||| || || ||||| ||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 182399 GTGTTCCCTGAGGAAGTATTACC 182421 | ||| ||||||| || ||||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACC 24110526 >seq4 Length=32756842 Score = 141 bits (156), Expect = 1e-28 Identities = 202/282 (72%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 180075 TACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GT 180133 || |||| |||||| ||||||||| || | ||||||| || | ||||| ||| || Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGAT-TGCTGT 25315175 Query 180134 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 180193 |||||||| ||| | || || | |||||| ||| | |||| || | ||||| Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCA 25315115 Query 180194 AGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGT 180253 ||| || ||| | | ||||| || || || ||||| || ||||||| ||| |||| Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 180254 TTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGT 180313 || ||||| ||||||||||| || |||||||| || |||||| | || ||||| ||||| Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 180314 CTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGT 180355 |||||||| | || || || ||||| |||| |||| Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGT 25314953 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 171910 TGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGTT 171969 |||| || || || ||||| || ||||| || || || ||| | ||||||||||||| Sbjct 10110511 TGGATGCAGCCGAAGAAGCTGGAGTTGACTTGCCTTACTCTTGCAGAGCCGGTGCCTGTT 10110570 Query 171970 CCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTTG 172029 ||| ||| || ||||| | |||| ||| || || ||||| || || || |||| Sbjct 10110571 CCACCTGCGCCGGTAAGATCGAGAAAGGTCAAGTTGACCAGTCTGATGGTTCGTTTCTTG 10110630 Query 172030 ATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCT 172079 | |||||| | |||| ||| | || |||| ||||| ||||| ||| Sbjct 10110631 AGGATGATAACTTGGAGAAAGGTTATGTCTTGACTTGTGTGGCTTACCCT 10110680 >seq8 Length=44809562 Score = 116 bits (128), Expect = 5e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 181654 ACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTG 181713 ||| |||| ||||||||| || || ||||| || ||| ||||| || || | || Sbjct 15117894 ACTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTG 15117953 Query 181714 GGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGA 181773 ||||||||| || |||||| | || ||| | | || ||||||||| | ||||||| Sbjct 15117954 GGCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGA 15118013 Query 181774 ACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTG 181832 ||||||||| ||| || | | ||||| || ||||| |||| || | |||| |||| Sbjct 15118014 ACTTGCTCGATCTGTTC-AATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTG 15118072 Query 181833 CTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGG 181868 ||| || || || || ||||| || |||||||||| Sbjct 15118073 ATGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 15118108 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| || | || || || || |||||||| ||| | || Sbjct 31673059 CTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGC 31673000 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 ||||||||||| |||||| ||| | ||| | || || ||||| || || |||||| Sbjct 31672999 TCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTC 31672940 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | |||||||||||| || |||| ||||||||||| Sbjct 31672939 GATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTAC 31672887 >seq2413 Length=755821 Score = 105 bits (116), Expect = 8e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| ||| | || || || || |||||||||||| |||| Sbjct 504588 CTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCCTGC 504529 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| |||||| ||| | || | || || ||||| || || |||||| Sbjct 504528 TCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTTGACCAGTCTGACCAGAGTTTCCTC 504469 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | ||| || ||||| || |||| || |||||||| Sbjct 504468 GATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCGTATCCTAC 504416 >seq6 Length=32494073 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| ||| | || || || || |||||||||||| | || Sbjct 22685553 CTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGC 22685494 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || ||||| || |||||| ||| | ||| |||| || ||||| || || |||||| Sbjct 22685493 TCGAGCTGCGCAGGTAAAGTTGTGTCTGGCTCGGTTGACCAGTCTGACCAGAGTTTCCTC 22685434 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | ||| || || || || || | || || ||||| Sbjct 22685433 GATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGCGCGGCGTACCCTAC 22685381 >seq1 Length=30920229 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 22712213 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 22712272 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 22712273 CCTACTTGGGGAG 22712285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610377381751800