Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3 152 6e-32 seq4 150 2e-31 >seq3 Length=44396707 Score = 152 bits (168), Expect = 6e-32 Identities = 406/617 (66%), Gaps = 24/617 (4%) Strand=Plus/Plus Query 170953 TCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCG 171012 ||||||| || |||||||||||||| ||||||||| | || || ||||| | Sbjct 24109950 TCTTTCTAATTTATCCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAG 24110009 Query 171013 CAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCAT 171072 | || || ||||| | ||| | || | ||||| || || || || ||||| ||| Sbjct 24110010 CGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCAT 24110069 Query 171073 TTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTG 171132 |||| || |||| |||| || |||| || | || | ||||| || ||| |||||| Sbjct 24110070 TTCATTTGCTGGGAATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTG 24110129 Query 171133 CAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAA 171192 | || || |||| | ||| | | ||| | || |||| | || | || Sbjct 24110130 CTACTGT--AGAA-ATATTTTTT--------ATCTGAAAATGGTGATGGTGCAAATAAA- 24110177 Query 171193 GCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAG 171252 || |||| ||| | || | || | ||||||||||| ||| | || | Sbjct 24110178 --------TTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAATGGTCACCG 24110229 Query 171253 CAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACT 171312 | ||| | || ||||||| || ||||| |||||| || || ||| | ||||| | Sbjct 24110230 CTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTGGTTACAAT 24110289 Query 171313 TCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTC 171372 || ||||||| || || || || | ||| | ||| || | | || ||||||| Sbjct 24110290 TCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAATAGTAGGTC 24110349 Query 171373 TAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACC 171432 |||| | ||||| | || || | || | || ||||| || | ||||| ||||| | Sbjct 24110350 TAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGCGGAAGATC 24110409 Query 171433 CAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGA 171492 | || || || |||||||||||||| ||||| ||| | || |||||||| | | |||| Sbjct 24110410 CGGACTT-GAAACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGCACTTGGA 24110468 Query 171493 TGTC--ATCA-GTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAA 171549 || | ||| | | | || || ||||| ||| | ||||| | || || || |||||| Sbjct 24110469 TGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGTTTTACCAC 24110528 Query 171550 GAGGTAACGCACTTTAA 171566 | || | | | |||||| Sbjct 24110529 GTGGAAGCACTCTTTAA 24110545 >seq4 Length=32756842 Score = 150 bits (166), Expect = 2e-31 Identities = 184/250 (74%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 169765 GGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTA 169824 || || |||| |||||| ||||||||| || || | || | || | ||||| Sbjct 25315197 GGTATACGTCTTTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTT 25315138 Query 169825 TTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 169884 ||||| | |||||| ||||||| || || ||| |||||||||| ||||| ||||| Sbjct 25315137 TTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCT 25315078 Query 169885 GGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTC 169944 |||||||||||||||||| | || || ||||| ||||| |||||||| ||||| || || Sbjct 25315077 GGTACTTTCAACTTTATGGTTGTATTTCAAGCTGAGCACAACATTCTTATGCACCCATTT 25315018 Query 169945 CACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCA 170004 |||||| ||| ||||| || | ||||| || | |||| || |||||| |||| Sbjct 25315017 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTC- 25314959 Query 170005 CTTGTTACTT 170014 |||| || || Sbjct 25314958 CTTGGTAATT 25314949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579194373792800