Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq3 196 6e-45 seq4 147 3e-30 seq8 104 3e-17 >seq3 Length=44396707 Score = 196 bits (216), Expect = 6e-45 Identities = 410/607 (68%), Gaps = 7/607 (1%) Strand=Plus/Plus Query 169698 CATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGT 169757 ||||||||||||| |||||||| ||||| |||||||| || || ||||| || || | Sbjct 24109917 CATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCCACTAGGTCAAT 24109976 Query 169758 CCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCC 169817 | |||||||||| || ||||| ||| | || || || | ||| | | || Sbjct 24109977 CTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTT 24110036 Query 169818 TGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCT 169877 | ||||| || || || ||| | ||||| |||| || || |||| | || || | Sbjct 24110037 TCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAATTGCCGGTGTAC 24110096 Query 169878 TGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTA--TGA 169935 |||||| || || | | ||||| |||||| ||| ||||| || | || || ||| Sbjct 24110097 TGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATATTTTTTATCTGA 24110155 Query 169936 AGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTA 169995 | | ||||| ||||||| || || ||| | | | || | ||||| ||||| Sbjct 24110156 AAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTA 24110215 Query 169996 TTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAA 170055 ||| |||||||| || |||||||| ||||| | ||||| || ||| ||||| || || Sbjct 24110216 TTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAA 24110275 Query 170056 GCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTAT 170115 | |||| | || || || ||||| ||||| || || | ||| | ||| || | Sbjct 24110276 ACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCT 24110335 Query 170116 TGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAG 170175 || || | || || ||| | || || |||| || | ||| | || || || | Sbjct 24110336 TGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTG 24110395 Query 170176 AGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGG 170235 ||||| |||||||| | | |||| || |||||||| ||||| || || || || ||||| Sbjct 24110396 TGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTCTTTTAAACGAAGG 24110454 Query 170236 ACTTCGTGCATGGTTGGCACCT---GCTGATCAACCACATGAAAACTTCATCTTCCCAGA 170292 |||| | ||| |||| || | | | || || ||||||||| | || ||| | || Sbjct 24110455 TATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGA 24110514 Query 170293 AGAAGTT 170299 || ||| Sbjct 24110515 GGAGGTT 24110521 >seq4 Length=32756842 Score = 147 bits (162), Expect = 3e-30 Identities = 194/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 168190 TACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTT 168249 || |||| ||||| ||||||||| | || | ||||| |||| ||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 168250 GCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAA 168309 ||||| || || | || || | | ||| || ||| | | || || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 168310 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTC 168369 || ||||| ||| ||| ||||| || |||||||| || || ||||||| ||| | || Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 168370 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 168429 || |||||||||||||| ||||| ||||| || || || ||| | || || ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 168430 TTTGGTGGCAGTTTGTTTAGTGCTATGCA 168458 || || ||| | |||||||||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCA 25314965 >seq8 Length=44809562 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 169538 CTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGG 169597 || |||| ||| ||||||||||| ||||| ||| ||||||||| | || ||| | ||| Sbjct 15117895 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 15117954 Query 169598 AACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAA 169657 ||||| || || || |||| || |||| || ||||| ||| | | |||||| Sbjct 15117955 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 15118014 Query 169658 TTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCT 169717 | || || | || | || ||||||||||| ||||||||| ||||| |||| | Sbjct 15118015 CTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGAT 15118074 Query 169718 GTATTTGTCAGTGTCTTTCTTATCTACCCACT 169749 || ||||| |||||||| || || || || Sbjct 15118075 GTTTTTGTTTCCGTCTTTCTAATTTATCCTCT 15118106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574455324558600