Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq3 282 5e-71 seq4 163 3e-35 seq8 116 4e-21 >seq3 Length=44396707 Score = 282 bits (312), Expect = 5e-71 Identities = 436/618 (71%), Gaps = 7/618 (1%) Strand=Plus/Plus Query 165574 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 165633 |||| | || | ||||||||||| || |||||||||||| |||||||| || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 165634 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTT 165693 || |||||||| |||||| || | || ||| || || || || || || | || Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 165694 CCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGT 165753 | | ||||| | ||||| || ||||| ||| | ||||| | |||||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 165754 TGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATAC 165813 ||| ||| | ||||| | || || | | || || |||||| ||| ||||| |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 165814 TCTGTATC--AAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAG 165871 | | |||| || ||||||| | |||||||| || || ||| || | | ||||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 165872 GAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCG 165931 |||||||| || |||||||| || || ||||| || ||||| | ||||| || ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 165932 TTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 165991 ||| ||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 165992 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCC 166051 | ||| | | | || | ||||| ||| | ||||| |||| |||| ||| | ||| Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 166052 CAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTC 166111 ||||| || | ||||| ||||| || || ||||||| |||||||| ||||| ||||| Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 166112 TTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGAT---CAACCGCATGAGAACTTT 166168 || || |||||| |||| ||||| |||| | ||| || || ||||| ||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 166169 GTCTTCCCTGAAGAAGTT 166186 | ||| |||| || ||| Sbjct 24110504 ATATTCACTGAGGAGGTT 24110521 >seq4 Length=32756842 Score = 163 bits (180), Expect = 3e-35 Identities = 209/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171 || |||| |||||| |||||||| || | |||| ||||| |||| ||||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 164172 GCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 164231 || || || || | |||||| | || || ||| || |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 164232 GGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTG 164291 || || ||| | | ||||| || || |||||||| || ||||||| ||| | || Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 164292 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 164351 || ||||| ||||||||||| || |||||||| || || ||| | || || ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 164352 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCT 164399 || ||||| | || || ||||| ||||| |||| |||| | |||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTCT 25314946 >seq8 Length=44809562 Score = 116 bits (128), Expect = 4e-21 Identities = 182/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 165382 AGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGC 165441 || ||||||||| || | | | | |||||| | || || |||| |||||| || Sbjct 15117852 AGCTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGC 15117911 Query 165442 TCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 165501 ||||| ||||| | ||| ||||| || || | ||||||||||| || ||||| Sbjct 15117912 ACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCA 15117971 Query 165502 CGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCG 165560 | | |||||| | |||| ||||| ||| | | | | |||||| | || || ||| || Sbjct 15117972 CTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCA 15118031 Query 165561 GTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 165620 | | || || || ||||| |||| |||| ||||| || | |||||||||| ||||| Sbjct 15118032 AT-TGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCT 15118090 Query 165621 TTCTCATCTACCCTCTGG 165638 |||| || || ||||||| Sbjct 15118091 TTCTAATTTATCCTCTGG 15118108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556907082829800