Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq4 159 4e-34 >seq4 Length=32756842 Score = 159 bits (176), Expect = 4e-34 Identities = 187/250 (75%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCA---GCATTT 168907 || ||||| | | |||||| |||||| |||||||| | || |||| | || Sbjct 25315200 CTGGGTATACGTCTTTGGATTGCTGTTGCATATTCAGCTTCTGT---TGCAATTGTTATT 25315144 Query 168908 GCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGA 168967 || || ||| | | |||||| ||||||| || ||| ||| ||||||||||||||||| Sbjct 25315143 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGA 25315084 Query 168968 ATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAT 169027 || ||||| || |||||||| ||| | ||||| ||||| |||||||||||||||||||| Sbjct 25315083 ATCTCTGGTACTTTCAACTTTATGGTTGTATTTCAAGCTGAGCACAACATTCTTATGCAC 25315024 Query 169028 CCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCAT 169087 || || || ||| ||| ||||| ||| | ||||| || | ||||| || |||||| Sbjct 25315023 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTTCCTATTTAGTGCTATGCAT 25314964 Query 169088 GGTTCACTTG 169097 |||| |||| Sbjct 25314963 AGTTC-CTTG 25314955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564423643701600