Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 seq4 127 2e-24 >seq3 Length=44396707 Score = 138 bits (152), Expect = 1e-27 Identities = 402/617 (65%), Gaps = 24/617 (4%) Strand=Plus/Plus Query 173375 TCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCG 173434 ||||| |||| || |||||||| || ||||||||| | ||| || ||||| | Sbjct 24109950 TCTTTCTAATTTATCCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAG 24110009 Query 173435 CAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCAT 173494 | || || ||||| | ||| | || | ||||| || || || || ||||| ||| Sbjct 24110010 CGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCAT 24110069 Query 173495 TTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTG 173554 |||| || |||| |||| || |||| || | || | |||| || ||| |||||| Sbjct 24110070 TTCATTTGCTGGGAATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTG 24110129 Query 173555 CAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATTCAAT 173614 | || || |||| | ||| | | ||| || || ||| ||| | | ||| Sbjct 24110130 CTACTGT--AGAA-ATATTTTTT--------ATCTGAAAATGGTGATGGTGCAAATAAAT 24110178 Query 173615 CCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAG 173674 | | || ||| | || | || | |||||||||||| ||| | || | Sbjct 24110179 ---------TATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAATGGTCACCG 24110229 Query 173675 CGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACT 173734 | ||| | || ||||||| || ||||| || ||||| || ||| | ||||| | Sbjct 24110230 CTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTGGTTACAAT 24110289 Query 173735 TCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTC 173794 || | ||||| || ||||| || | ||| | ||| | | | || ||||||| Sbjct 24110290 TCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAATAGTAGGTC 24110349 Query 173795 TTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATC 173854 | || | ||||| | || || | ||| | || ||||| || | ||||| ||||||| Sbjct 24110350 TAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGCGGAAGATC 24110409 Query 173855 CAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGA 173914 | || || || |||||||||||||| ||||| ||| | || |||||||| | | |||| Sbjct 24110410 CGGACTT-GAAACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGCACTTGGA 24110468 Query 173915 TGTCATCTGTAGAT---CAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAA 173971 || | || ||| || || ||||| ||| | |||| | || || || |||||| Sbjct 24110469 TGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGTTTTACCAC 24110528 Query 173972 GAGGTAACGCACTTTAA 173988 | || | | | |||||| Sbjct 24110529 GTGGAAGCACTCTTTAA 24110545 >seq4 Length=32756842 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 172195 TGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTAT 172254 ||||| ||| ||||||||||| |||| || | ||||||| ||| | | || Sbjct 25315185 TGGATTGCTGTTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTAC 25315126 Query 172255 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 172314 ||| | ||||| || || ||| |||||||||| ||||| ||||| ||||| |||||| Sbjct 25315125 CCAATTGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 25315066 Query 172315 TTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGA 172374 |||||| | || || ||||| ||||| |||||||| ||||| || || |||||| ||| Sbjct 25315065 TTTATGGTTGTATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGT 25315006 Query 172375 GTAGCAGG 172382 ||||| || Sbjct 25315005 GTAGCTGG 25314998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588032492621200