Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq3 214 2e-50 seq4 163 3e-35 seq8 96.9 4e-15 >seq3 Length=44396707 Score = 214 bits (236), Expect = 2e-50 Identities = 379/550 (69%), Gaps = 2/550 (0%) Strand=Plus/Plus Query 164001 CAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCC 164060 |||| | || | ||||||||||| |||||||| || ||| |||||||| || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 164061 TCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATT 164120 || |||||||| ||||||||| | || |||||| || || || || || |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 164121 CCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGT 164180 | || | || | ||||| |||||||| ||| | |||| | || ||| || ||||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 164181 TGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAA-ATA 164239 ||| ||| |||| |||| || || ||| |||||| | || | || || |||| || Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 24110145 Query 164240 CATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAG 164299 || | |||| |||| || ||||| | || || ||| | | | || | | Sbjct 24110146 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 24110205 Query 164300 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGT 164359 |||| |||||||| |||||||| || |||||||| ||||| | ||||| || | ||| | Sbjct 24110206 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 24110265 Query 164360 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 164419 |||| || || | ||| | || || || ||||| ||||| || || | ||| || ||| Sbjct 24110266 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 24110325 Query 164420 CATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTC 164479 || ||| || | || || ||| | || || |||| || | || | | Sbjct 24110326 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 24110385 Query 164480 AAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTAT 164539 |||| ||| | ||||| |||||||| || || || |||||||| || || || || | | Sbjct 24110386 AAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTTT 24110444 Query 164540 TGAACGAAGG 164549 | |||||||| Sbjct 24110445 TAAACGAAGG 24110454 >seq4 Length=32756842 Score = 163 bits (180), Expect = 3e-35 Identities = 207/282 (73%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GT 162770 || |||| ||||| |||||||| || | |||| ||||| |||| ||||| ||| || Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGAT-TGCTGT 25315175 Query 162771 AGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCA 162830 ||||| || || |||||||| | || || ||| || |||| || | ||||| Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCA 25315115 Query 162831 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGT 162890 ||| ||| ||| | | ||||| | || ||| |||||| ||||||| ||| |||| Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 162891 CTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGT 162950 || ||||| |||||||||||||| ||||| || || |||||||| ||||| || ||||| Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 162951 CTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 162992 ||||| || | || || ||||| ||||| |||| ||||| Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGT 25314953 >seq8 Length=44809562 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 163852 CTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGG 163911 || |||| |||||| || || || ||||| || ||| ||||| || || | ||| Sbjct 15117895 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 15117954 Query 163912 AATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAA 163971 |||||| || |||||| | || || | | || ||||| ||| | | |||||||| Sbjct 15117955 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 15118014 Query 163972 CTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGC 164030 |||||||| ||| || | | |||| || ||||| |||| |||| ||||| |||| Sbjct 15118015 CTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGA 15118073 Query 164031 TGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGG 164065 ||| || ||| |||||||| || || ||||||| Sbjct 15118074 TGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 15118108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557566261859000