Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq3 277 2e-69 seq4 183 3e-41 seq8 138 1e-27 >seq3 Length=44396707 Score = 277 bits (306), Expect = 2e-69 Identities = 434/617 (70%), Gaps = 7/617 (1%) Strand=Plus/Plus Query 168863 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 168922 |||| | || | ||||||||||| || |||||||||||| |||||||| || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 168923 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATT 168982 || |||||||| |||||| || | || ||| || || | || || || ||||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 168983 CCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGT 169042 | | ||||| | ||||| || ||||| ||| |||||||| |||||||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 169043 AGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATAC 169102 || ||| | |||| | || || | | || ||| |||||| ||| ||||| |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 169103 TCTGTATC--AAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAA 169160 | | |||| || ||||||| ||||||| || || ||| || | ||| | Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 169161 GAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCG 169220 || || || ||||||||||| || || ||||| || ||||| | |||||||| ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 169221 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 169280 || ||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 169281 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCC 169340 | ||| | | | || | ||||| ||| | ||||| |||| |||| ||| ||||| Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 169341 CAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTC 169400 ||||| || | ||||| |||||||| || |||| || |||||||| || || || || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 169401 TTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGAT---CAACCTCATGAGAACTTT 169457 || ||||||||| |||| | ||| | || || ||| || |||||||| ||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 169458 GTGTTCCCTGAGGAAGT 169474 | ||| ||||||| || Sbjct 24110504 ATATTCACTGAGGAGGT 24110520 >seq4 Length=32756842 Score = 183 bits (202), Expect = 3e-41 Identities = 209/281 (74%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 ||||||| |||||| |||||||| || | |||| ||||| |||| ||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 167475 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 167534 ||||| || ||| | || || | |||||| ||| | |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 167535 GGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTC 167594 || ||| ||| | | |||||||| || ||||||||||| ||||||| ||| |||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 167595 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 167654 || ||||| ||||||||||| || |||||||| || || ||| | || || ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 167655 TTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 |||||||| | || || ||||| ||||| |||| |||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGT 25314953 >seq8 Length=44809562 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 168714 CTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGG 168773 || |||| |||||| |||||||| ||||| | ||||||||||| || || | ||| Sbjct 15117895 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 15117954 Query 168774 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAA 168833 |||||||| || |||||| | |||||| | |||| ||||| ||| | | | | |||||| Sbjct 15117955 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 15118014 Query 168834 CTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 168892 || || || ||| || | | || || || ||||| |||| |||| ||||| || | Sbjct 15118015 CTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGA 15118073 Query 168893 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGG 168927 |||||||||| ||||||||| || || ||||||| Sbjct 15118074 TGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 15118108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560590165658000