Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq4 159 5e-34 >seq4 Length=32756842 Score = 159 bits (176), Expect = 5e-34 Identities = 197/268 (74%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 215636 TGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCT 215695 ||||||||| || | | | ||||| | | |||||| |||||| || || || || Sbjct 25315218 TGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTTGCATATTCAGCTTCT 25315159 Query 215696 GTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGAT 215755 || | || |||| || ||| | | || ||| | ||||| || ||| ||| || Sbjct 25315158 GTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTAAT 25315099 Query 215756 GCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCAC 215815 | |||||| || ||||||||||| || ||||||| ||| |||| || || ||||||||| Sbjct 25315098 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTTCAAGCTGAGCAC 25315039 Query 215816 AACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTG 215875 |||||||| ||||||||||| |||||||||||||| |||||||| ||||| || | | Sbjct 25315038 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTTCCTA 25314979 Query 215876 TTCTCTGCAATGCACGGTTCACTTGTTA 215903 || ||| ||||| |||| |||| || Sbjct 25314978 TTTAGTGCTATGCATAGTTC-CTTGGTA 25314952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745057897091600