Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq3 259 6e-64 seq4 187 3e-42 seq8 111 2e-19 >seq3 Length=44396707 Score = 259 bits (286), Expect = 6e-64 Identities = 450/647 (70%), Gaps = 13/647 (2%) Strand=Plus/Plus Query 183561 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCC 183620 |||| | || | ||||||||||| |||||||||||||| || || || || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 183621 ACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT- 183679 ||| ||||| ||| |||||||||| |||||||| || ||||| || || ||| ||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 183680 --TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGG 183737 |||| || |||| ||||||| || || ||| | | || | || ||| || |||| Sbjct 24110026 CATCCTCTTTTTCC--AAGGGTTT-CATAATTGGGCACTGAATTCATTTCATTTGCTGGG 24110082 Query 183738 AGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAA 183797 | |||| ||| |||| || | || || | | ||||| |||||| || ||||| || Sbjct 24110083 AATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AA 24110141 Query 183798 TACATTGTA--TGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAA 183855 || || || |||| |||| || ||||| | ||| || ||| | | | |||| Sbjct 24110142 TATTTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAA 24110201 Query 183856 GAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTT 183915 | ||||| || ||||| ||||| || || || || || ||||||| |||||| |||| | Sbjct 24110202 GCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCT 24110261 Query 183916 GCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTT 183975 || ||| |||||| | |||||| || ||||||||||| ||||| || || | ||| | Sbjct 24110262 GCTTTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTA 24110321 Query 183976 TGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTA 184035 || | | || ||| || | || || ||| | || || |||| |||| || | Sbjct 24110322 AGGATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATT 24110381 Query 184036 AGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATA 184095 ||||| || | ||||| |||||||| | | |||| || |||||||| || || || Sbjct 24110382 TCCCAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATT 24110440 Query 184096 CTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGAT---CAACCACATGAGAAT 184152 ||| | || ||||| | || | ||| | || || ||| || || ||||| || Sbjct 24110441 CTTTTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAAC 24110500 Query 184153 TTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||||| | |||||||| ||||| | || | |||||| ||| Sbjct 24110501 ATTATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAATG 24110547 >seq4 Length=32756842 Score = 187 bits (206), Expect = 3e-42 Identities = 210/281 (75%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 182121 TACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTA 182180 || |||| ||||| ||||||||| || | | | ||||| |||| ||||| ||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 182181 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAA 182240 ||||| || ||| | || || | |||||| ||||| |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 182241 GGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTT 182300 || || || ||| ||||| || |||||||| || || ||||||| |||| | || Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 182301 TTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTA 182360 || |||||||||||||||||||||||||| || || |||||||| |||||||| |||||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 182361 TTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGT 182401 ||||| || | || |||||||| ||||| |||| ||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGT 25314953 >seq8 Length=44809562 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 183397 CATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAA 183456 |||||| | ||| ||| |||| |||||| | ||||| || ||| || ||||| ||| Sbjct 15117880 CATTCTTTGATGTAACTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAA 15117939 Query 183457 CTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATG 183516 || || || | ||| |||||| || |||||| |||| || | | || ||||| ||| Sbjct 15117940 CTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATG 15117999 Query 183517 CTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTC 183576 | | | |||||||||||||| | || | || ||||| ||||| |||| ||| Sbjct 15118000 TTGCATTAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAGTTGCATTC 15118059 Query 183577 TCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGG 183625 | ||||| |||| ||||||||| || || || || ||||| |||| Sbjct 15118060 TTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 15118108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611676540421000