Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq3 277 2e-69 seq4 192 7e-44 seq8 111 2e-19 >seq3 Length=44396707 Score = 277 bits (306), Expect = 2e-69 Identities = 449/642 (70%), Gaps = 7/642 (1%) Strand=Plus/Plus Query 166541 CAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCC 166600 |||| ||||| | || |||||||| |||||||| || ||| |||||||| || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 166601 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATT 166660 || |||||||| |||||| || | || ||| || || | || || || ||||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 166661 CCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGT 166720 | |||| || | ||||| || || || ||| ||||||| |||||||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 166721 AGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACAC 166780 || ||| | || || | || || | | || || |||||| ||| ||||| || | Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 166781 TCTGTATC--AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAG 166838 | | |||| || ||||||| ||||||| || || || || | | ||||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 166839 GAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCG 166898 |||||||| ||||||||||| || || ||||||| |||||| | ||||| || ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 166899 TTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGG 166958 ||| ||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 166959 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCC 167018 | ||| | | | || | ||||| ||| | ||||| |||| |||| ||| ||||| Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 167019 CAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTC 167078 |||||| | | ||||| || ||||| || ||||||| ||||| || || || ||||| Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 167079 TTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGAT---CAACCTCATGAGAGTTTC 167135 || || || ||||| || |||||||||| || ||| || |||||||| | | Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 167136 GTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||| |||| |||||| | || | || | | |||| ||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAA 24110545 >seq4 Length=32756842 Score = 192 bits (212), Expect = 7e-44 Identities = 207/274 (76%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 165087 TTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTG 165146 ||| || |||| |||||| |||||||| || | | || ||||| |||| ||||||| Sbjct 25315237 TTGTTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGC 25315178 Query 165147 CGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGG 165206 || |||||| || |||| || || | || |||||| || |||| || | || Sbjct 25315177 TGTTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGG 25315118 Query 165207 TCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTT 165266 |||||| ||||| ||| ||||||||||||| || |||||||||||||| |||| |||| | Sbjct 25315117 TCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGT 25315058 Query 165267 CGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGG 165326 || || ||||| || || |||||||||||||| || || |||||| | || || ||||| Sbjct 25315057 TGTATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 25314998 Query 165327 GGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 165360 |||||||| || | || || |||||||||| Sbjct 25314997 TGTATTCGGCGGCTTCCTATTTAGTGCTATGCAT 25314964 >seq8 Length=44809562 Score = 111 bits (122), Expect = 2e-19 Identities = 181/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 166349 AGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGC 166408 || ||||||||| || || | | | |||||| | | || |||| |||||| || Sbjct 15117852 AGCTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGC 15117911 Query 166409 TCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCA 166468 ||||| ||||| | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 15117912 ACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCA 15117971 Query 166469 CGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAG 166527 | ||||||| | |||| ||||| ||| | | | |||||| | ||||| ||| || Sbjct 15117972 CTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCT-GTTC 15118030 Query 166528 GTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCT 166587 | || || || |||||| | || || | ||||| |||| ||| || ||| |||| Sbjct 15118031 AATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCT 15118090 Query 166588 TTCTCATCTACCCTCTGG 166605 |||| || || ||||||| Sbjct 15118091 TTCTAATTTATCCTCTGG 15118108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563642868540800