Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 >seq4 Length=32756842 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 170032 TGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCA 170091 |||||||| | | || | ||||| |||| |||||| ||| |||||||| ||| | Sbjct 25315218 TGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTTGCATATTCAGCTTCT 25315159 Query 170092 GTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGAC 170151 || || | | ||||| ||||| | || || | ||||| ||| ||| || | Sbjct 25315158 GTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTAAT 25315099 Query 170152 GGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCAC 170211 || ||||||||||| ||||| ||||| || ||||| ||| | ||||| ||||| |||||| Sbjct 25315098 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTTCAAGCTGAGCAC 25315039 Query 170212 AACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGG 170264 |||||||||||||||||||| || ||| ||| || |||||| | ||||| || Sbjct 25315038 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGG 25314986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582829458148000