Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq1734 87.8 5e-13 >seq1734 Length=1503 Score = 87.8 bits (96), Expect = 5e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 37598 TGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAGC 37657 |||| |||||||| ||||| || || || | || |||||| ||| | | |||| Sbjct 862 TGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGC 803 Query 37658 AGCGTGCAAACAAGCGACC-GTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||| | |||||||| || ||| || || ||||| || ||||| |||| ||||||||| Sbjct 802 AGCGGCCCAACAAGCGCCCTGTG-AACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAG 744 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAG 37773 || || || | || | | || ||||| |||||| ||||||||| | || ||| Sbjct 743 GACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAG 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151166631322890