Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq4 161 1e-34 >seq4 Length=32756842 Score = 161 bits (178), Expect = 1e-34 Identities = 209/286 (73%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 84349 CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACA 84408 |||| |||| |||||| ||| ||||| || |||||||||||||| || || |||| Sbjct 25314955 CAAG-GAACTATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACA 25315013 Query 84409 TGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACG 84468 ||||||| || |||||||| ||||| || || || || || |||| ||| ||||||| | Sbjct 25315014 TGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGAAAG 25315073 Query 84469 TTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAA 84528 | || ||||| || || ||||| |||| ||| ||| ||||| || | || || | | Sbjct 25315074 TACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGATCA 25315133 Query 84529 GGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCA 84588 ||| |||||| | |||||| | ||| || || |||||| ||||| |||| | Sbjct 25315134 AGAAAACAGCAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGACGTA 25315193 Query 84589 TACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA 84634 |||| |||| | ||||||||| |||||| |||| ||| |||| Sbjct 25315194 TACCCAGACAGAAACTAAGTTCCCAATCACGATCCATATAA-CAAA 25315238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571255426358600