Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 105 8e-18 >seq7 Length=41685129 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||| | ||| | || | | |||||| ||||||||| Sbjct 5826852 CCTCCTTGGTCAACATAACGAGCAGTGTCATTAAATACACGCAGCATTGGAACAATACCA 5826793 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||||| || ||| ||||||||| ||| | || || ||||||| Sbjct 5826792 TTAGAAGCACCATTGGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGAA 5826733 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || |||| || | |||||| ||| | |||||||| || Sbjct 5826732 ACACCGATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATATC 5826673 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || |||||||| |||| Sbjct 5826672 CCTTCAATGCTATCATCCTTCAT 5826650 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||||||| || | || ||||| |||||| |||||||| || || | || | Sbjct 5826531 AGTTCCTGAATTGAAGAGAGTAGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 5826472 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| |||| | ||||| || || || || || || | ||| || | ||| | Sbjct 5826471 GTAAGTTTGAATAGCGGAATCAATGTCTTGTTTGTGAATCCCAACAGAGACCCTCATGAG 5826412 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||||| | | || | ||| || || |||||| | || | Sbjct 5826411 CATGTGCTGAGGCCTTTCAACAACTATCCCGTTGACTTTTAAGAGGTATGATCTCTCAAG 5826352 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 ||||| || ||||| |||| ||| ||| || ||||| || ||| Sbjct 5826351 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGATT 5826303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090917913800