Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 138 9e-27 seq4 131 1e-24 seq1802 122 7e-22 seq2 122 7e-22 seq8 120 2e-21 seq3 105 5e-17 seq5 104 2e-16 seq7 100 2e-15 seq9 95.1 1e-13 seq6 93.3 3e-13 seq1358 87.8 1e-11 >seq1 Length=30920229 Score = 138 bits (152), Expect = 9e-27 Identities = 446/685 (65%), Gaps = 8/685 (1%) Strand=Plus/Plus Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969 ||||| || ||||| |||||||| | |||| || || | |||| || || ||||| Sbjct 27927795 AGAACGGCGTGCGAGAGAGCCAAGAGGACTCTCTCTTCGACTGCTCAGACGACGATTGAG 27927854 Query 551970 GTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAA 552029 | ||||| | | ||||| ||||||| | ||| | || | | || | || || Sbjct 27927855 ATTGATTCTCTCTACGAGGGGATTGATTTCTACACGACGATCACTCGCGCGAGGTTCGAG 27927914 Query 552030 GATATTTGTTCT--GATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAGA 552086 || ||| | ||||| || || || || || || || || |||| ||| || Sbjct 27927915 GAG--TTGAACATGGATCTGTTCAGGAAGTGTATGGAGCCGGTGGAG-AAGTGTTTGAGG 27927971 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 || | ||||| ||||| ||| |||||||| ||||||| |||||||| || || || Sbjct 27927972 GACGCGAAGATGGATAAGAGCAATGTACATGATGTTGTGCTCGTTGGTGGGTCCACTAGG 27928031 Query 552147 ATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205 || |||||| | | | | || || ||| ||| ||||| || | | | | || Sbjct 27928032 ATCCCTAAAGTGCAGCAGCTTTTGCAGGACTTTTTT-AATGGGAAGGAGCTTTGTAAGAG 27928090 Query 552206 TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG 552265 | ||||||| || ||||||||||| ||||| || || | ||||| || ||| | || Sbjct 27928091 TATTAATCCTGACGAGGCTGTTGCTTATGGAGCGGCGGTGCAAGCTGCGATTTTGAGCGG 27928150 Query 552266 ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 || |||| || | || || | | ||| | ||||| |||||| |||| | || Sbjct 27928151 GGAAGGGAATGAGAAGGTTCAGGATTTGTTGCTTCTTGATGTCACTCCTTTATCCTTGGG 27928210 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 ||| || || | ||||||| | |||||| | | || || || || || ||||| Sbjct 27928211 TTTGGAGACTGCTGGAGGTGTGATGACTGTTTTGATTCCGAGGAACACCACGATTCCGAC 27928270 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||||| | | || || || ||||| || ||||| | | ||| || ||| | Sbjct 27928271 CAAAAAGGAGCAGATCTTCTCGACTTATTCGGACAATCAGCCAGGTGTGTTGATCCAAGT 27928330 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 | |||||||| ||| | || || ||||| || | | || | ||| | | Sbjct 27928331 CTACGAAGGAGAGAGAGCAAGAACCAAGGATAACAACCTTTTGGGGAAGTTTGAGCTGAG 27928390 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||||| |||||||| || || || || || || || || ||| || ||||| || Sbjct 27928391 CGGTATCCCTCCTGCACCACGGGGTGTTCCTCAGATCACTGTCTGTTTTGACATCGACGC 27928450 Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590 ||| || || ||||| ||| ||||| Sbjct 27928451 CAACGGTATCTTGAACGTGTCTGCT 27928475 >seq4 Length=32756842 Score = 131 bits (144), Expect = 1e-24 Identities = 522/815 (64%), Gaps = 10/815 (1%) Strand=Plus/Minus Query 551780 AGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCA 551837 |||||| ||||||| |||| || || || ||||| |||||||| ||||| || | || Sbjct 14681884 AGCTACGGCTGGAGATACTCACCTCGGCGGGGAAGACTTTGATAACAGACTTGTGAACCA 14681825 Query 551838 TGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGATCT-ATCTACATCTGCCAAAGC 551896 | | |||| || || || | || |||| ||| | | | | | || | || Sbjct 14681824 T--TTCGTTGCGGAGTTCAAGAGGAAGCACAAGAAGGATATCAGCGGAAAC-GCGAGGGC 14681768 Query 551897 TCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCA 551956 | | | || ||||||||||| || ||||| || || | ||||| || |||| Sbjct 14681767 GTTGAGGAGGCTGAGAACTGCTTGTGAGAGAGCGAAGAGAACGCTTTCTTCCACGGCTCA 14681708 Query 551957 AACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAG 552016 || |||||||| | ||||| || ||||| |||||| | || | || ||| | Sbjct 14681707 GACGACTATTGAGATCGATTCTTTGCACGAGGGTGTTGATTTCTACGCGACCATCTCGCG 14681648 Query 552017 GGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACA 552076 || | ||||| || || || || || || || || || || || || | Sbjct 14681647 TGCGAGGTTTGAGGAGATGAACATGGACCTGTTCAGGAAGTGTATGGATCCCGTGGAGAA 14681588 Query 552077 AGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGG 552136 ||| | ||||| | ||| | || || | || || ||| | || ||||| || || Sbjct 14681587 AGTCCTGAGAGACGCTAAGCTCGACAAGAGCCGTGTCCACGAAGTGGTTCTTGTGGGAGG 14681528 Query 552137 ATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAA 552194 ||| || || ||||||||||| | | | || ||| | | ||||| || || | Sbjct 14681527 ATCGACGAGGATTCCTAAAATCCAGCAGCTTTTGCAAGATTTC--TTCAACGGGAAGGAG 14681470 Query 552195 TTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCT 552254 | |||| |||| || ||||| |||||||| ||||| || || |||| || || Sbjct 14681469 CTCTGCAAAAGCATTAACCCTGATGAAGCTGTTGCGTATGGCGCTGCGGTTCAGGCTGCG 14681410 Query 552255 ATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCT 552314 ||||| | || || || || | ||| || || | ||| | || || | ||| Sbjct 14681409 ATTCTGACCGGTGAAGGAAGCGACAAGGTGCAAGATCTTCTGCTTCTTGACGTGGCGCCT 14681350 Query 552315 CTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACT 552374 || ||||| | || || | ||| || | |||||| | ||| || || || Sbjct 14681349 CTGAGCCTTGGAATCGAGACGGCTGGTGGAGTGATGACTGTGTTGATCCCGAGGAACACG 14681290 Query 552375 ACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTT 552434 || |||||||||| || | || || ||||| ||| |||| || || | | |||| Sbjct 14681289 ACGGTTCCTTGTAAGAAGGAGCAAGTGTTCTCTACCTATGCAGACAACCAGCCGGGTGTT 14681230 Query 552435 ACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACT 552494 || ||| | ||||||||||| | || ||||| || || | ||||| || Sbjct 14681229 CTGATCCAAGTCTTTGAAGGAGAGCGTGCGAGGACCAAAGACAACAACCTTCTTGGAACC 14681170 Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 ||| | | | || ||||||||||| || |||||||| || || || | ||| || Sbjct 14681169 TTTGAGCTCAAGGGCATTCCTCCTGCGCCACGTGGAGTTCCTCAGATCAATGTTTGCTTT 14681110 Query 552555 GATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 || || || |||||||| || || || ||||| || Sbjct 14681109 GACATGGACGCCAATGGGATCTTAAACGTGACGGC 14681075 Score = 104 bits (114), Expect = 2e-16 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || |||||||| |||||||||||||| | |||||| | ||| Sbjct 27352479 ATAGGGATAGATCTTGGTACCACATACTCTTGTGTTGGTGTTTACAAGAATGGTCATGTT 27352538 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||||||||| ||||| ||| | | |||||| || | || ||||||| || Sbjct 27352539 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCCTGGGTAGCTTTCACCGAC 27352598 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCC 550164 | ||| | ||||||| || || || | || || ||| |||||| Sbjct 27352599 TCCGAAAGACTCATTGGTGAGGCTGCCAAGAACCAGGCTGCTGTTAATCC 27352648 >seq1802 Length=1203683 Score = 122 bits (134), Expect = 7e-22 Identities = 561/874 (64%), Gaps = 22/874 (3%) Strand=Plus/Plus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 || ||| ||| || ||||||| | | ||||| ||| ||||| || ||||||| Sbjct 651733 GGTACTTTTGATGTCTCTCTTCTCACCATTGAAGAAGGTATCTTTGAGGTCAAAGCTACT 651792 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 |||||| ||||||| || || || ||||| || || || |||| | ||| | || Sbjct 651793 GCTGGAGACACTCATCTCGGCGGGGAGGATTTCGACAACAGGATGGTTAACCAT--TTTG 651850 Query 551845 TTGAAGATTTTAAACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCG 551902 | |||| ||||| | || | ||| || || || | | | | | ||||||| | Sbjct 651851 TCCAAGAGTTTAAGAGGAAGAGCAAGAAGGACAT-TAGCGGTAACC-CTAGAGCTCTTAG 651908 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 | | || ||||| ||||| ||||| || | ||||||| || | | || ||||| Sbjct 651909 GAGGTTGAGGACTGCCTGCGAGAGAGCAAAGAGGACTCTTTCTTCCACTGCCCAGACCAC 651968 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTA-TAATACGC-CTATTTCGAGGGCC 552020 || || | || || ||||| ||||| ||||||| || | || || ||| | | Sbjct 651969 CATCGAGATTGACTCTTTATTCGAGGGGATTGATTTCTACTCTGCGCTCACTCGCG--CT 652026 Query 552021 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT 552080 | || || || | ||||| || || || || || || || || |||| Sbjct 652027 AGGTTCGAGGAGCTCAACATGGATCTTTTCAGGAAGTGTATGGAGCCTGTTGAG-AAGTG 652085 Query 552081 T-TAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | || | ||| | ||||| || || || ||| || || |||| || || || || || Sbjct 652086 TCTACGCGATGCTAAGATGGACAAGAGCACAGTCCACGATGTTGTCCTCGTCGGAGGGTC 652145 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTA 552197 |||| | || || ||| | | | | | ||| | | |||||||||||| | | Sbjct 652146 TACACGTATCCCAAAAGTCCAGCAGCTTCTCCAAGATTTC--TTCAATGGTAAAGAGCTT 652203 Query 552198 AATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTA 552255 || |||| ||||||| || |||||||| || |||||||| || |||| | |||| Sbjct 652204 --TGCAAGTCCATTAATCCTGACGAGGCTGTGGCTTATGGTGCTGCGGTTCAGGGTGCTA 652261 Query 552256 TTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTC 552315 ||||| || || | || || | ||| | || | || | || || ||||||| Sbjct 652262 TTCTTAGCGGTGAAGGCAACGAGAAGGTGCAAGACCTTCTTCTCTTGGACGTGACTCCTC 652321 Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375 | ||||||||| | ||||| | || || ||||||| | | ||| | |||| || | Sbjct 652322 TCTCTCTTGGTCTTGAAACCGCAGGTGGAGTTATGACCACCTTGATCCAGCGAAACACAA 652381 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 | || || || || | || || || || || || || || || ||| ||| Sbjct 652382 CGATCCCCACCAAGAAGGAGCAGGTCTTCTCCACCTACTCTGACAACCAGCCTGGTGTGT 652441 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 ||||| | | ||||| || ||| |||||||| || || | ||||| | | Sbjct 652442 TGATTCAGGTCTACGAAGGTGAGAGAGCTAGAACTAAAGACAACAACCTTCTTGGAAAGT 652501 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 || | | || || ||||||||||| ||||| || || || || ||| ||||| Sbjct 652502 TTGAGCTCTCCGGCATCCCTCCTGCTCCACGTGGTGTCCCTCAGATCACAGTCTGTTTCG 652561 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 | || ||||| || || || | ||||| |||| Sbjct 652562 ACATTGATGCAAACGGCATCCTCAATGTCTCTGC 652595 >seq2 Length=44367670 Score = 122 bits (134), Expect = 7e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 550385 CAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAA 550444 ||| |||| || | || || || |||||||| | || ||||| ||||| || | | Sbjct 38075527 CAAAAAGTGACCAAGGCTGTTATCACTGTACCTGTCTACTTTAACGACTCCCAGAGGACA 38075586 Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504 ||||||||||||||||| || || ||||| ||| |||||||||||||||||||||| || Sbjct 38075587 GCTACTAAAGATGCTGGTCGCATAGCTGGGCTTGATGTTCTTCGTATTATCAATGAGCCC 38075646 Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||||| | | || ||||| |||| || Sbjct 38075647 ACTGCTGCTTCTTTGGCTTATGGTTTTGAAAA 38075678 Score = 113 bits (124), Expect = 4e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || |||||||| || || ||||| ||||| || | ||||| Sbjct 38065513 AAGTGACCAAGGCTGTTATCACTGTACCTGCCTACTTTAACGACTCCCAGAGGACAGCTA 38065572 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 ||||||||||||| ||||| ||||| | |||| ||||||||||||||||| || |||| Sbjct 38065573 CTAAAGATGCTGGTCGTATCGCTGGTTTAGATGTCCTTCGTATTATCAATGAGCCCACTG 38065632 Query 550509 CTGCTGCACTTGCATATGGACTTGA 550533 ||||| | | || ||||| |||| Sbjct 38065633 CTGCTTCTTTGGCTTATGGTTTTGA 38065657 Score = 113 bits (124), Expect = 4e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 || |||| || | || || || ||||| || || || || || ||||| || | || Sbjct 38071071 AAAAAGTGACCAAGGCTGTCATCACTGTGCCTGCTTACTTCAACGACTCGCAGAGGACAG 38071130 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 |||||||||||||||| || ||||||||||| ||||||||||||| |||||||| || | Sbjct 38071131 CTACTAAAGATGCTGGTCGCATTGCTGGACTGGATGTTCTTCGTATCATCAATGAGCCCA 38071190 Query 550506 CTGCTGCTGCACTTGCATATGG 550527 |||||||| | | || ||||| Sbjct 38071191 CTGCTGCTTCTTTGGCGTATGG 38071212 >seq8 Length=44809562 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || ||||| ||||||||| ||| || |||||||||||| || || || | Sbjct 30326648 AGACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGAATATTGTAATCCGCAAGCGTGCGA 30326589 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||| ||||| || || || || ||||| ||||| || |||||||| ||||| Sbjct 30326588 CCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCTTCC 30326529 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || ||||| ||| || || ||||| || |||| || | || || ||||| Sbjct 30326528 TTGTCCTGAATCTTTGCCTTGACGTTGTCAATCGTGTCAGAGT-TCTCCACCTCAAGAGT 30326470 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || || || || || |||||||| |||||| Sbjct 30326469 GATGGTTTTGCCTGTGAGGGTCTTCACGAAAATCTGCATA 30326430 Score = 98.7 bits (108), Expect = 8e-15 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| || |||||||| || || ||| |||| ||| |||||||| || ||||| Sbjct 30326421 GAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTG--AATGTTGTAATCCGCAAGAGTG 30326364 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | |||||| || || ||||| ||||| || ||||||||||| || || || || ||| Sbjct 30326363 CGTCCATCTTCGAGCTGCTTTCCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCT 30326304 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 || || || ||||| ||| || || || || || || | | | || | | Sbjct 30326303 TCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAA 30326244 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | |||||||| || || || || || ||||| |||||| Sbjct 30326243 GTGATGGTTTTACCGGTGAGGGTCTTGACAAAAATCTGCATA 30326202 >seq3 Length=44396707 Score = 105 bits (116), Expect = 5e-17 Identities = 103/131 (79%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 563262 GAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 ||| |||||||| | || ||| ||||| || ||||| ||||| |||||||| | Sbjct 19912172 GAGGACAAGATGCAAAGTCGACTCCTTTTGG--ATGTTGTAGTCAGCGAGAGTTCTGCCA 19912229 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||||||||| |||||||| || ||||| || |||||||| || || ||||| || ||| Sbjct 19912230 TCTTCAAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCCTTA 19912289 Query 563380 TCTTGAATTTT 563390 |||||||| || Sbjct 19912290 TCTTGAATCTT 19912300 Score = 96.9 bits (106), Expect = 3e-14 Identities = 157/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| | || | ||||| ||| ||||| ||| ||||||||||| || ||||| Sbjct 19893890 GAGACGCAAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCAGCCAGTGTTCT 19893949 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || || || || ||||||||||| || ||||| ||||| || |||||||| ||||| Sbjct 19893950 GCCGTCCTCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGAGGAATGCCTTC 19894009 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGA---GTACA-TTCGA 563431 || ||||| || ||| || || || || || || ||| | || || | Sbjct 19894010 CTTGTCTTGGATCTTTGCCTTGACATTGTCTATAGT----GTCTGAACTCTCCACCTCCA 19894065 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| | || || || || || || ||||||||||| |||||| Sbjct 19894066 GAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAAATCTGCATA 19894109 Score = 95.1 bits (104), Expect = 1e-13 Identities = 151/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||| ||| ||| || ||| ||||| ||||| ||||| | |||||||| Sbjct 19894130 CAAG-TGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGCAAGAGTACGCCCATCTTCAA 19894188 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| ||||| ||||| || | || ||||| ||||||||||| || || ||||| |||| Sbjct 19894189 GTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATACCCTCCTTATCCTGAA 19894248 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGA---GTACA-TTCGAGAGTAACAGTT 563442 | || ||| || || || ||||| ||| | || || | ||||| ||| Sbjct 19894249 TCTTGGCTTTAACATTGTCGATGGTATC----TGAACTCTCCACCTCCAAAGTAATGGTT 19894304 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || ||||| | ||| || || || || |||||| Sbjct 19894305 TTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 19894337 Score = 95.1 bits (104), Expect = 1e-13 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| || |||||||| | || | |||||||||||||||||||| || || Sbjct 42925054 ACTGTTCCAGCTTACTTTAATGATGCTCAGAGGCAAGCTACTAAAGATGCTGGTCGGATC 42924995 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | ||||| | ||||| |||||||| || |||||||| ||| | |||||| Sbjct 42924994 GCTGGTTTGGATGTTGAGAGGATTATAAATGAACCAACGGCTGCTGCTCTTTCCTATGGA 42924935 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| || || ||||| ||||| || || || ||||| || ||||| ||| Sbjct 19894383 ATGTTGTAATCGGCCAGGGTTCTGCCGTCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTT 19894442 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| || ||||| ||||| ||||| ||||| || ||| || || || || Sbjct 19894443 TGCTGATCCGGGGGAATGCCTTCCTTATCCTGAATCTTGGCTTTAACGTTGTCGATGGTG 19894502 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | || | || ||||| || | || || || || ||||| |||||||| || || Sbjct 19894503 TCGGAGT-TTTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTAACGAAGATCTG 19894561 Query 563472 CAT 563474 ||| Sbjct 19894562 CAT 19894564 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| || ||||||||||| ||| | ||| |||||||||||||| || ||| Sbjct 19912394 GAGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGG--ATATTGTAATCAGCGAGGGTT 19912451 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || || || || || |||||||| || ||||| || |||||||| || ||||| || Sbjct 19912452 CTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCC 19912511 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || || || || || ||| || || || || || | | | || ||||| Sbjct 19912512 TCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGCTTTCCAC-CTCGAG 19912570 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || ||||| |||||||| || ||||| Sbjct 19912571 GGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 19912612 Score = 87.8 bits (96), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||||||||||| | |||||| | || Sbjct 34682583 ATTGGGATTGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAATGGTCATGTC 34682642 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || ||||||||||| ||||| ||| | | ||| || || | ||| |||||| || Sbjct 34682643 GAGATCATTGCCAATGACCAAGGAAACCGTATTACACCTTCCTGGGTTGGTTTCACTGAC 34682702 Query 550115 ACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 | ||| | | | | ||||||| || || || | || || ||| ||||||| | || Sbjct 34682703 AATGAGAGACTCA-TTGGTGAGGCTGCTAAGAACCAGGCGGCTGTTAATCCTGAGAGGAC 34682761 Query 550174 TATTTTTGATGCTAA 550188 | | ||||||| ||| Sbjct 34682762 TGTCTTTGATGTTAA 34682776 Score = 86.0 bits (94), Expect = 5e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||||||||| ||||| | | ||| |||||||| ||||||||||| || | || Sbjct 21554302 ATGTTGTAATCAGCAAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTC 21554361 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| || || || || || ||||| ||||| || || ||| || ||||| ||| Sbjct 21554362 TGCTGGTCCGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTA 21554421 Query 563413 TCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | | | || || | ||| | ||| || || || | || || || |||||||| Sbjct 21554422 TCGGAGCTCTCCAC-CTCCAAAGTGATAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTG 21554480 Query 563472 CATA 563475 |||| Sbjct 21554481 CATA 21554484 >seq5 Length=39062406 Score = 104 bits (114), Expect = 2e-16 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || ||||| || |||||||||||| | | |||||| | ||| Sbjct 12329764 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGTCTACAAGAATGGTCATGTT 12329823 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||||||||| ||||||||| | | |||||| |||| ||| ||||||| || Sbjct 12329824 GAAATCATTGCCAATGACCAAGGTAACCGTATTACTCCTTCTTGGGTTGCTTTCACCGAC 12329883 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCC 550164 | || | | ||||| || || || | ||||| ||| |||||| Sbjct 12329884 TCCGAGAGGCTCATCGGTGAGGCTGCTAAGAACCAAGCTGCTGTTAATCC 12329933 Score = 86.0 bits (94), Expect = 5e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||||||||| ||||| | | ||| |||||||| ||||||||||| || | || Sbjct 24281608 ATGTTGTAATCAGCAAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTC 24281549 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| || || || || || ||||| ||||| || || ||| || ||||| ||| Sbjct 24281548 TGCTGGTCCGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTA 24281489 Query 563413 TCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | | | || || | ||| | ||| || || || | || || || |||||||| Sbjct 24281488 TCGGAGCTCTCCAC-CTCCAAAGTGATAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTG 24281430 Query 563472 CATA 563475 |||| Sbjct 24281429 CATA 24281426 >seq7 Length=41685129 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| || ||||||||||| ||| | ||| || ||||| |||||||||||| Sbjct 33846305 GAGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGG--ATGTTGTAGTCAGCTAGAGTT 33846362 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || || || || || |||||||| || || || || ||||||||||||||||| ||| Sbjct 33846363 CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCT 33846422 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || || ||||| || ||| || || || || || | | | || || || Sbjct 33846423 TCCTTGTCCTGAATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCAC-CTCAAG 33846481 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| || || || || |||||||| || ||||| Sbjct 33846482 GGTGATCGTTTTGCCGGTGAGTGTCTTAACGAAGATCTGCAT 33846523 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || ||||||||||| || | ||||| ||||||||||| || ||| Sbjct 36677968 ACTGTGCCTGCTTACTTTAATGACTCGCAGAGGACGGCTACGAAAGATGCTGGTCGAATT 36678027 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | | || ||||||||||||||||| || || |||||| | | || ||||| Sbjct 36678028 GCTGGTTTGGAGGTACTTCGTATTATCAATGAGCCCACGGCTGCTTCGTTGGCTTATGGG 36678087 Query 550529 CTTGA 550533 |||| Sbjct 36678088 TTTGA 36678092 >seq9 Length=3036023 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || ||||| || | |||||| ||||||||||| || ||| Sbjct 2556003 ACTGTGCCTGCTTACTTCAACGACTCGCAGAGGACAGCTACGAAAGATGCTGGTCGGATT 2555944 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | | |||||||||||||||||||| || || |||||| || | || ||||| Sbjct 2555943 GCTGGGTTGGAAGTTCTTCGTATTATCAATGAGCCGACCGCTGCTTCATTGGCTTATGGG 2555884 Query 550529 CTTGA 550533 |||| Sbjct 2555883 TTTGA 2555879 >seq6 Length=32494073 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || | ||||| ||| || ||||| || ||||||||||| ||||| Sbjct 7251154 GAGACGCAAGACCAAGTGAAGCGTAGACTCCTTTTGG--ATGTTGTAATCAGCGAGAGTA 7251211 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||||||||| ||||||||||| || | || ||||| || |||||||| ||| Sbjct 7251212 CGCCCATCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGAATGCCT 7251271 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || || || || || || || ||||| || || | | | || || | Sbjct 7251272 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCAC-CTCCAA 7251330 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||| || || || || || ||||||||||| |||||| Sbjct 7251331 AGTACTAGTCTTCCCGGTGAGTGTCTTAACGAAAATCTGCATA 7251373 >seq1358 Length=1446404 Score = 87.8 bits (96), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| || ||| |||| || |||||| ||||||||||| | || || | ||| Sbjct 1333262 ATAGGGATCGATCTAGGGACAACATATTCATGTGTTGGTGTGTACCATAACAACCACGTT 1333321 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| || || || ||||| || ||||||| || ||||||| ||| | ||||| || Sbjct 1333322 GAAATCATAGCAAACGATCAGGGAAACAGAATCACACCATCTTGGGTTGCCTTCACTGAT 1333381 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | | || || || || || ||||||| | |||||| || Sbjct 1333382 ACCGAACGTCTCATAGGCGAGGCTGCTAAGAATCAAGCGGCCAAGAATCCTGAGGGGACC 1333441 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 || || || | |||||| |||| ||||||| Sbjct 1333442 ATCTTCGACCCCAAACGTCTAATGGGAAGAA 1333472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029161408922050