Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq4 178 4e-40 >seq4 Length=32756842 Score = 178 bits (196), Expect = 4e-40 Identities = 194/256 (76%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 36360 TGCATAGCAGCGAATA--AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACG 36417 ||||||||| |||| |||| | |||||||| || || ||||| | ||| || || | Sbjct 25314965 TGCATAGCACTAAATAGGAAGC--CGCCGAATACACCAGCTACACCTAACATGTGAAATG 25315022 Query 36418 GATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAA 36477 | |||||||| || ||||| || || ||||| |||| |||||| |||||||| || || | Sbjct 25315023 GGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGAAAGTACCAGAGA 25315082 Query 36478 TACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAG 36537 | || ||||||||||||| ||| ||||| ||||| |||| ||||||| ||||| |||| Sbjct 25315083 TTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 25315142 Query 36538 CAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTC 36597 ||| | |||||||| |||||||| || ||| ||||| | | ||||| || | Sbjct 25315143 CAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGACGTATACCCAGAC 25315202 Query 36598 TATAACTAAGTTCCCA 36613 ||||||||||||| Sbjct 25315203 AGAAACTAAGTTCCCA 25315218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150449852985930