Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq4 150 5e-32 >seq4 Length=32756842 Score = 150 bits (166), Expect = 5e-32 Identities = 191/258 (74%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 5581 ATGCATAGCAGCGAACA--AAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||| || | |||| | |||||||| ||||| ||||| | |||||| || Sbjct 25314964 ATGCATAGCACTAAATAGGAAGC--CGCCGAATACACCAGCTACACCTAACATGTGAAAT 25315021 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || |||||||| || ||||| || || || ||||| | ||||||||| |||||||||||| Sbjct 25315022 GGGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGAAAGTACCAGAG 25315081 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758 || || ||||||||||||| | |||||||| || || | ||||| | || || || Sbjct 25315082 ATTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 25315141 Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817 | | || | ||||| | ||||||||||| || |||||| | || || || | Sbjct 25315142 GCAATA-ACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGACGTATACCCAG 25315200 Query 5818 TCTGTAACTAAGTTCCCA 5835 | | ||||||||||||| Sbjct 25315201 ACAGAAACTAAGTTCCCA 25315218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152644986642870