Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq4 172 2e-38 >seq4 Length=32756842 Score = 172 bits (190), Expect = 2e-38 Identities = 193/256 (75%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 25840 TGCATAGCAGCGAATA--AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACG 25897 ||||||||| |||| |||| | |||||||| || || ||||| | ||| || || | Sbjct 25314965 TGCATAGCACTAAATAGGAAGC--CGCCGAATACACCAGCTACACCTAACATGTGAAATG 25315022 Query 25898 GATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAA 25957 | |||||||| || ||||| || || ||||| |||| |||||| |||||||| || || | Sbjct 25315023 GGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGAAAGTACCAGAGA 25315082 Query 25958 TACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAG 26017 | || ||||||||||||| ||| ||||| ||||| |||| ||||||| ||||| |||| Sbjct 25315083 TTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 25315142 Query 26018 CAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTC 26077 ||| | |||||||| |||||||| || ||| ||||| | | || || || | Sbjct 25315143 CAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGACGTATACCCAGAC 25315202 Query 26078 TATAACTAAGTTCCCA 26093 ||||||||||||| Sbjct 25315203 AGAAACTAAGTTCCCA 25315218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151989006468420