Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq1734 168 2e-37 >seq1734 Length=1503 Score = 168 bits (186), Expect = 2e-37 Identities = 263/370 (71%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 21207 TGGTGGACTACCTGCAGCTGCTGGAGAGCTCCGG---CAAGTCCACTCGCACCGAGGACG 21263 |||| || |||||||||||| || || | || | || | ||||| |||| | Sbjct 952 TGGTTGATTACCTGCAGCTGATGCGCTGCCCAGGCTACGAGGGGAACCGCACTCAGGAGG 893 Query 21264 TCAGCGACATGTCCC-GCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATC 21322 || || || |||| | || || ||| | |||| | ||| | | |||||| ||| Sbjct 892 TCGCGGAGATCTCCCGGGCATTG-AAGGGGTTGGCCAAAGAGTTCAATTGCCCCGTCATC 834 Query 21323 GTGCTGTCGCAGCTCAACCGCTCCCTG-GAGCAGCGGCCGAACAAGCGACCGATGATGTC 21381 | ||| |||||| | |||| | || ||||||||||| |||||||| || ||| | Sbjct 833 GCGCTATCGCAGTTGTCCCGC-CAGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGAACGC 775 Query 21382 GGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCG 21441 ||| |||| |||||||| ||||||||||||||||| || | ||||||||||| || || Sbjct 774 AGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGTTCGTCTATCG 715 Query 21442 CGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAA 21501 |||||||||||| ||||||| || ||||| || || || ||||||||| ||| || Sbjct 714 AGACGAGGTCTACAACCCGGACACTGAGTACAAGGGGGTTGCCGAGTTGATCCTCGGCAA 655 Query 21502 GCACCGCAACGGCGAGCCAAGCACTGTTCGGTGCGCGTTCCTGGGTAAGTACTCGCGATT 21561 |||||| ||||| || | | || || ||| |||||| | || ||| | | || || Sbjct 654 GCACCGGAACGGTGAAACCGGTACCGTGCGGACCGCGTTTATTGGCAAGGAAACTCGTTT 595 Query 21562 CGAGCAGCTC 21571 | || |||| Sbjct 594 TGTGCCGCTC 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157105651829130