Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 >seq2 Length=44367670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||||||||| | ||| | || || || ||||| || |||||||| ||||| || || Sbjct 42352559 GACGTGAGCGAGGATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAG 42352618 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT-CGCTCACGTAAA 29995 ||||| || | || | ||| || | |||||||| |||||||| | ||| ||||||| Sbjct 42352619 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 42352677 Query 29996 ACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAA-GTCTTTGGGGTTCCAG 30054 ||||| | ||||||| |||||||| ||||| | | || ||| || ||||| Sbjct 42352678 ACTGAGCAAACATGTGGCATGGAGGAAGTGCCAT-CGCCTTAAGGTCAGAAGGATTCCAA 42352736 Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 || ||| || || |||| || || || |||||| |||| Sbjct 42352737 GCAGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 42352777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604925831285