Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq4 167 3e-36 >seq4 Length=32756842 Score = 167 bits (184), Expect = 3e-36 Identities = 207/281 (74%), Gaps = 7/281 (2%) Strand=Plus/Minus Query 162834 TCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTC 162893 |||| | ||||||||| || | | | ||||| |||| |||||| ||||||||| || Sbjct 25315225 TCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTTGCATATTC 25315166 Query 162894 TGCACCAGTATCTGCA---GCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTC 162950 || | || |||| | | ||||| |||||| |||| || | |||||||| Sbjct 25315165 AGCTTCTGT---TGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAG 25315109 Query 162951 TTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCA 163010 ||| ||| | | |||||||| || || ||||||||||| |||| ||| | || || || Sbjct 25315108 TTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTTCA 25315049 Query 163011 AGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGG 163070 ||| ||||||||||| || |||||||| || || ||| | || || || ||||||||||| Sbjct 25315048 AGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 25314989 Query 163071 TGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTT 163111 || | || |||||||||||||| |||| |||| || || Sbjct 25314988 CGGCTTCCTATTTAGTGCTATGCATAGTTC-CTTGGTAATT 25314949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553067204989800