Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq3 212 7e-50 seq8 154 2e-32 seq4 136 4e-27 >seq3 Length=44396707 Score = 212 bits (234), Expect = 7e-50 Identities = 434/642 (68%), Gaps = 5/642 (1%) Strand=Plus/Plus Query 164987 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCC 165046 |||| | || | ||||||||||| |||||||||||||| ||||| || || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 165047 ACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 165106 ||| ||||| || |||||| || | || ||||| || || || || ||| |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 165107 CCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGT 165166 | | | || | ||||| || || || ||| | || || | || ||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 165167 TGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAA-ATA 165225 ||| ||| | |||| | || || ||| |||||| |||| | || || |||| || Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 24110145 Query 165226 CATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAG 165285 |||| || |||| || ||||||| || || ||| | | | || | | Sbjct 24110146 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 24110205 Query 165286 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGT 165345 |||| |||||||| |||||||| || |||||||| ||||| | ||||| || ||| | Sbjct 24110206 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 24110265 Query 165346 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA 165405 |||| || || | ||| | || || || ||||| ||||| || || | ||| | ||| Sbjct 24110266 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 24110325 Query 165406 CATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTC 165465 || ||| || | ||||| ||| | ||||| |||| || | ||| | | Sbjct 24110326 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 24110385 Query 165466 AGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTAT 165525 | || || | ||||| |||||||| | | |||| || |||||||| ||||| || || | Sbjct 24110386 AAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTCTTT 24110444 Query 165526 TGAATGAAGGACTACGTGCTTGGTTGGCACCT---GCTGATCAACCCCATGAAAACTTTA 165582 | || ||||| | || ||||| |||| || | | | || || ||||||||| ||| Sbjct 24110445 TAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTA 24110504 Query 165583 TCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | ||| | || || || || || | || | | | ||||||| Sbjct 24110505 TATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAAT 24110546 >seq8 Length=44809562 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 ||||| || |||||| || || |||| || || || ||| | || ||||| || Sbjct 31673107 ACTCCAGAAGGAGAACAAGAGGTTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCT 31673048 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || ||||| ||| | || | ||||||||| ||||||||| |||||||| |||||| Sbjct 31673047 GAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCA 31672988 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| |||||| ||||||| ||| ||| ||| ||||| || ||||| ||| Sbjct 31672987 GGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 31672928 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 ||||| | ||||||||| || || |||| || ||||| || |||||| Sbjct 31672927 ATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 31672880 >seq4 Length=32756842 Score = 136 bits (150), Expect = 4e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 163219 TATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTA 163278 ||||||| ||||| ||||||||| | | | ||||| || | ||||| ||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 163279 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 163338 ||||| || || |||||||| | || || ||| || |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 163339 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTC 163398 || ||| ||| | | ||||| || || |||||||| || ||||||| ||| |||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 163399 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTC 163458 || ||||| ||||||||||| || |||||||| || || ||||| || || |||||||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 163459 TTCGGTGG 163466 ||||| || Sbjct 25314993 TTCGGCGG 25314986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563191682894600