Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 214 3e-50 seq8 199 7e-46 >seq6 Length=32494073 Score = 214 bits (236), Expect = 3e-50 Identities = 446/660 (68%), Gaps = 11/660 (2%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | ||| ||| | | ||||| ||| ||| | Sbjct 29608463 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCTCACGCGCTCCTCCGAGAG 29608522 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | |||| | || |||| || ||| || ||||| | ||||| ||| ||||| Sbjct 29608523 CTTCGTCCTCAGGAG---GGAGTAGATCAGGCACGCGAAGTCGCAGTGCAGGCCCTCGTC 29608579 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 | ||| ||| ||||||||||| ||| || ||||||| ||| | || || ||||| Sbjct 29608580 TCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCA 29608639 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || |||||||| || || ||||| || ||||| || Sbjct 29608640 GAAGATCGAGCAGAAGCTACCGGAGAAGAATATCCCTTCCACGCAAGCAAACGCCACGAT 29608699 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| | || | | | || ||| |||||| | | ||||| | ||||||| Sbjct 29608700 CCTCTCGGCAAAGGCCTGAGATCC-GTC---GATCCACGTCAAGGCCCATTGGGCCTTCT 29608755 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 || || ||| || |||||||| || || |||||||| | | | ||| | ||| Sbjct 29608756 TCGCGACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGATCCCTCTCTCTATTATCCT 29608815 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || ||| | ||| ||||||||| ||||| | ||||| || ||||||| Sbjct 29608816 TGATGTAAGTATCTAACAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCT 29608875 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCA 48518 |||||||||||||||| | |||||| | |||||||| || | ||| | | Sbjct 29608876 GGAACCCGTAGAAGGCGCGGGCCTCGGAGACCTGCACGTCGGACATGAACCGAGAGGCGA 29608935 Query 48519 GATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAAT 48578 | ||||| ||| ||||| || || || || |||||||| ||||| ||||| | ||| | Sbjct 29608936 GGTTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGACGAAGT 29608995 Query 48579 GGCGCTCGTTGTGGGTGAGA---GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTT 48635 ||||||| || | ||||| | | |||| | | ||||| | ||||| |||| Sbjct 29608996 GGCGCTCTCCGTCGCTGAGATTTTCCTCCCAGTCGCGGGGGTCTTGGGAGAGGTCGACTT 29609055 Query 48636 CTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 | || | ||||||||||| || ||||| |||||||| |||| || | || |||| Sbjct 29609056 CCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGT 29609115 >seq8 Length=44809562 Score = 199 bits (220), Expect = 7e-46 Identities = 434/646 (67%), Gaps = 8/646 (1%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| |||||| || | ||| ||| ||| ||||| ||| | | | Sbjct 36833038 AAACTCCCTCTCGATCTCCACGGCGTCGCACACGATCGACTTCACGCGCTCCTCCGTGAG 36833097 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | |||| | || |||| || ||| || || || | ||||| ||||||||| Sbjct 36833098 CTTCGTCCTCAGGAGGGTG---TAGATCAGGCACGCGAAATCGCAGTGCAGGCCTTCGTC 36833154 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 | ||| ||| ||||||||||| | |||||||||| ||| | || || ||||| Sbjct 36833155 TCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCAGGCATGAGCCCTCGCTTCTTCAGCCA 36833214 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || |||||||| || || || || |||||| || || Sbjct 36833215 GAAGATCGAGCAGAAGCTACCGGAGAAGAATATCCCTTCGACGCACGCGAAGGCCACGAT 36833274 Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||||| | |||| | | || |||||| | | ||||| | |||||||| Sbjct 36833275 CCTCTCGGCAAAAGTCTGGGACCCATC---GATCCACGTCATGGCCCATTGGGCCTTCTT 36833331 Query 48340 CTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGC-GTCCG 48398 | || ||| || || ||||| || || |||||||| | | | ||| | || |||| Sbjct 36833332 CGCGACGCAGGGGATGGTCTCGATCGCGCGGAAGAGATGGTCCCGCTC-CTTGTTGTCCT 36833390 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || || | ||| ||||||||| ||||| | ||||| || ||||||| Sbjct 36833391 TGATGTACGTGTCTAACAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCT 36833450 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCA 48518 |||||||||||||||| | ||||| | ||||| || || | ||| | | Sbjct 36833451 GGAACCCGTAGAAGGCGCGCGCCTCGGAGACCTGGACGTCGGACATGAACCGAGAGGCGA 36833510 Query 48519 GATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAAT 48578 ||||||| ||| || || || || || || |||||||| ||||| ||||| | ||| | Sbjct 36833511 GATTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGT 36833570 Query 48579 GGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTT 48638 ||||||| || | ||||| | |||| | || ||| | | ||||| ||||| | Sbjct 36833571 GGCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCT 36833630 Query 48639 CCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 | | ||||||||||| || || || |||||||| |||| || Sbjct 36833631 CGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGAT 36833676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931503165612800