Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq8 161 2e-34 seq6 136 7e-27 >seq8 Length=44809562 Score = 161 bits (178), Expect = 2e-34 Identities = 387/577 (67%), Gaps = 25/577 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||||||||| || | || || Sbjct 36833676 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 36833617 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACG---AGCAGCATTTTCTCAAG 25593 || |||||| || |||| | ||| ||| |||| ||| || || |||| Sbjct 36833616 TCCCAGGACACACGCGACTGGGAGAATCT---CAACGACGGAGAGCGCCACTTCATCAAA 36833560 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || ||||||||| | | Sbjct 36833559 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCTCGG 36833500 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || || ||| | ||||| |||||||| |||||||| || ||| Sbjct 36833499 TTCATGTCCGACGTCCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCGATC 36833440 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| |||| || || ||| | |||||||| | ||| | Sbjct 36833439 GAGAACATCCACTCCGAGATGTA---CAGCCTCCTGTTAGACACGTACATCAAGGACAAC 36833383 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||| | || | || || | || |||||| ||| ||| || || || |||||| Sbjct 36833382 AAGGAGCGGGACCATCTCTTCCGCGCGATCGAGACCATCCCCTGCGTCGCGAAGAAGGCC 36833323 Query 25831 CGGTGGGCCATGAAGTGGATCAACAG---CCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | |||||||||| ||||||| | | ||||| | |||| |||| || | || Sbjct 36833322 CAATGGGCCATGACGTGGATCGATGGGTCCCAGA------CTTTTGCCGAGAGGATCGTG 36833269 Query 25888 GCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGC 25945 ||||| || ||| || || || || || ||| |||| || ||| | |||||||||| Sbjct 36833268 GCCTTCGCGTGC-GTCGAAGGGATATTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGC 36833211 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 | ||| || ||| |||||| ||| || ||| ||||||||||| ||| || |||| Sbjct 36833210 TGAAGAAGCGAGGGCTCATGCCTGGGTTGACCTTCTCCAACGAGCTGATCTCGAGAGACG 36833151 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 | || || ||| | ||||| || |||||| ||||||| Sbjct 36833150 AAGGCCTGCACTGCGATTTCGCGTGCCTGATCTACAC 36833114 >seq6 Length=32494073 Score = 136 bits (150), Expect = 7e-27 Identities = 377/572 (66%), Gaps = 16/572 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||||||||| || | || || Sbjct 29609104 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 29609045 Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||| || |||| | | ||| | | | |||| || || |||| Sbjct 29609044 TCCCAAGACCCCCGCGACTGGGAGGAAAATCTCAGCGACGGAGAGCGCCACTTCGTCAAA 29608985 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||| || | | Sbjct 29608984 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAACCTCGCCTCTCGG 29608925 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| | |||||| |||||||| |||||||| || ||| Sbjct 29608924 TTCATGTCCGACGTGCAGGTCTCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCGATC 29608865 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| |||| || || ||| | || ||||| | || Sbjct 29608864 GAGAACATCCACTCCGAGATGTA---CAGTCTCCTGTTAGATACTTACATCAAGGATAAT 29608808 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||| |||| || || | || |||||| || ||| || || || |||||| Sbjct 29608807 AGAGAGAGGGATCATCTCTTCCGCGCGATCGAGACGATCCCCTGCGTCGCGAAGAAGGCC 29608748 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 | |||||| ||| ||||||| || | | || || ||| |||| || | || || Sbjct 29608747 CAATGGGCCTTGACGTGGATCGACGGATCTCAGGCCT----TTGCCGAGAGGATCGTGGC 29608692 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 |||||| ||||| || || || ||| |||| || ||| | ||||||||||| | Sbjct 29608691 GTTTGCTTGCGTGGAAGGGATATTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGCTGA 29608633 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || ||| |||||| ||||| ||| ||||||||||| ||| || ||||||| Sbjct 29608632 AGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAGG 29608573 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | || ||| | || || || |||||| ||||| Sbjct 29608572 GCCTGCACTGCGACTTCGCGTGCCTGATCTAC 29608541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928815251124800