Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq3 280 2e-70 seq4 221 1e-52 seq8 93.3 4e-14 >seq3 Length=44396707 Score = 280 bits (310), Expect = 2e-70 Identities = 408/571 (71%), Gaps = 8/571 (1%) Strand=Plus/Plus Query 10195 CAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTG--TCAGTGTTTTCCTCATCTAT 10252 |||| | ||| | || ||||| || ||||||||||||| ||||| ||| || || ||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTT--CTAATTTAT 24109963 Query 10253 CCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGC 10312 ||||| || || ||| ||||||||||| ||| ||||| || || ||||| || || || Sbjct 24109964 CCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 24110023 Query 10313 TTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGA 10372 ||| | ||||| |||| || |||||||||||| | || ||| | || ||| || ||||| Sbjct 24110024 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGA 24110083 Query 10373 GTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAAC 10432 |||| ||| ||||||| | ||| || ||| || || | || | ||||||| ||| Sbjct 24110084 ATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAG-AAAT 24110142 Query 10433 ACACTTTATC--AAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAG 10490 | |||||| || |||| || ||||| | || |||||| | | ||||| Sbjct 24110143 ATTTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAG 24110202 Query 10491 AAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTG 10550 ||||| || ||||| ||||| || |||||||| || ||||| | || ||||| || Sbjct 24110203 CCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTG 24110262 Query 10551 CTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTT 10610 ||||| |||||||| ||| | || ||||||||| | |||||||| || | ||| | Sbjct 24110263 CTTTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAA 24110322 Query 10611 GGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAT 10670 ||| | || ||| ||| | ||||| ||| | || || |||| || | || | | Sbjct 24110323 GGATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTT 24110382 Query 10671 CTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCC 10730 | ||||| || | || | |||||||| | | |||| || ||||| || || ||||| | Sbjct 24110383 CCCAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTC 24110441 Query 10731 TTCTGAACGAAGGTCTTCGTGCATGGATGGC 10761 || | ||||||||| |||| | |||||||| Sbjct 24110442 TTTTAAACGAAGGTATTCGCACTTGGATGGC 24110472 >seq4 Length=32756842 Score = 221 bits (244), Expect = 1e-52 Identities = 226/294 (77%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 8569 TTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATC 8628 |||| |||||||| |||||| ||||||||| || | | || || || |||| |||||| Sbjct 25315238 TTTG-TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATT 25315180 Query 8629 TGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTT 8688 ||||||||| || ||| ||||||| || | |||||| ||| | |||| || || Sbjct 25315179 GCTGTTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATT 25315120 Query 8689 GGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATG 8748 |||||||| || ||| ||||||||||||| || ||||| ||||| ||||||| |||| Sbjct 25315119 GGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 25315060 Query 8749 CTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCT 8808 |||| || || |||||||||||||| || |||||||| || |||||| | ||||| ||| Sbjct 25315059 GTTGTATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 25315000 Query 8809 GGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCT 8862 ||||| |||||||| | || ||| || |||||| |||| | || | |||| Sbjct 25314999 GGTGTATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTCT 25314946 >seq8 Length=44809562 Score = 93.3 bits (102), Expect = 4e-14 Identities = 171/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 10007 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 10066 || || |||||| || | | | |||||| | | ||| |||| |||||| | || Sbjct 15117856 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 15117915 Query 10067 GGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 10126 |||||||| || ||| || || || || | ||||||||||| || |||||| | Sbjct 15117916 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 15117975 Query 10127 GCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATC 10186 || ||| | ||||| || |||||||| | | ||||| || || ||| || | | Sbjct 15117976 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCAATTG 15118035 Query 10187 CGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTC 10246 |||||||| ||||| | || || | ||| | |||| ||||||||| || || || Sbjct 15118036 CGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCTA 15118095 Query 10247 ATCTATCCACT 10257 || ||||| || Sbjct 15118096 ATTTATCCTCT 15118106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516463569480000