Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq1239 158 2e-34 >seq1239 Length=2566 Score = 158 bits (174), Expect = 2e-34 Identities = 838/1303 (64%), Gaps = 78/1303 (6%) Strand=Plus/Minus Query 10946 CGTATCCGCAACATCCTGAAGTCGCGCCAGATAGGTGCCACGTTCTACTTTGCCCGCGAG 11005 || |||||| | |||||||||||||||||||| || || | |||||| ||| ||| Sbjct 2430 CGGATCCGCCATATCCTGAAGTCGCGCCAGATCGGGCTGACCTACTACTTCGCCGCCGAA 2371 Query 11006 GCGCTGATTGACGCGCTGACCACCGGGCGCAACCAGATATTTTTGTCGGCCAGCAAGGCG 11065 ||| | || ||||| || |||||| ||||||||| || |||| || ||| || Sbjct 2370 GCGTTCATGGACGCAGTGCTGACCGGGGACAACCAGATTTTCCTGTCCGCGAGCCGCGCC 2311 Query 11066 CAGGCGCACGTCTTTAAAAACTACATCATTGACTTTGCC-CGCCAGG--TGGACGTTGAC 11122 ||| | | || || | ||||||| | | || ||| ||| | | | || | || Sbjct 2310 CAGTCCGAAGTGTTCCGCAGCTACATCGTCGCGTTCGCCGCGCAATGGTTCGATATCGAG 2251 Query 11123 CTGAAGGGCGACCCGAT-----TGTGCT-----GCCGAACGGTGCCCGC--CTGATTTTT 11170 ||| ||| | || || || || | | | | ||| || ||| ||| Sbjct 2250 CTGTCCGGCAATCCCATCATCTTGAGCAAAGACGGCAAGCCGTGGGCGGAACTGCGGTTT 2191 Query 11171 CTTGGCACCAACGTGCGCACCGCGCAGAGCTACACCGGCAACCTGTATCTCGATGAATAT 11230 || || ||| ||| |||||||||||| |||| || | || |||| ||| Sbjct 2190 CTCTCGACGAACAGCAACACGGCGCAGAGCTACCACGGCCACGTCTACATCGACGAAGTG 2131 Query 11231 TTCTGGATACCGAAATTCCAGGAGCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATAAA 11290 |||||||| || || |||||| |||||| | ||| ||||||| ||| | |||| | Sbjct 2130 TTCTGGATCCCCAATTTCCAGAAGCTGCAGACGGTGGCCAGCGCGATGGCCTCGCATGCA 2071 Query 11291 AAGTGGCGCACCACCTACTTTTCCACGCCGTCGAGC-CTGT--CGCACTCCGCTTATCCG 11347 ||||||||| |||||||| ||||||| | ||| | || ||||| || |||||| Sbjct 2070 AAGTGGCGCCTGACCTACTTCTCCACGC---CCAGCGCGGTAACGCACCAGGCATATCCG 2014 Query 11348 TTCTGGTCGGGCGAGCTGTTCAACAAAGGGCGGCGCAGCAAAGCCGATCGCATCGAAATC 11407 | |||| | |||||| |||| ||| | |||| | |||| | || || | Sbjct 2013 TACTGGACCGGCGAGGAGTTCCGCAACAGCAAGCGC-GGAAAGAAGGCCGGGCCG---TG 1958 Query 11408 GACCTGTCGCATACGCA---CCTGGCAAAAGGCGCGCTGTGCGGTGACGGCCAGTGGCGG 11464 | || | || | |||| || || |||||| ||||| ||||| |||||||| Sbjct 1957 GCCCAG-CG-AAGCGCAGATCCATGC---CGGCGCGTTGTGCCCGGACGGGCAGTGGCGC 1903 Query 11465 CAGATTGTGACGGTTGAGGATGCGCTGACCGGCGGCTGTAACCTGTTTGACCTCGACCAG 11524 || | | ||| || | || || | |||||||||| |||||||| ||||| || | Sbjct 1902 AAGGTCATCACGATTCAAGACGCCATCGCCGGCGGCTGCAACCTGTTCGACCTGGAGCGC 1843 Query 11525 CTCCAGCTGGAATAC-------AGCCCGTCGGAATACCAGAACCTGCTGATGTGTGAGTT 11577 || |||||||| ||| ||| | ||| | ||| ||| | ||||| |||| Sbjct 1842 CTGCAGCTGGAGTACGACGAAGAGCGCTTCG----AACAG---CTGTTCATGTGCAAGTT 1790 Query 11578 TGTGGACGATGAGGCGAGC-GTGTTCCCGTTCGCCGAGCTGCAGACCTGCATGATCGACA 11636 | ||| | | | || | ||| | || |||| ||| || |||| | || | Sbjct 1789 CATCGAC-AGCACCCAGGCTGCATTCGCCTTGACCGACCTGGAGCGCTGC-TATTC--CG 1734 Query 11637 GCCTGGAGGAATGGAGCGACTTTAACCCGTACCTGCCGCGCCCGTTTGATTACCGCCCGG 11696 | ||| ||||| |||| ||||| || ||||| ||||| || ||||||||| Sbjct 1733 ACTTGGGCCTATGGACTGACTACGACCCGGACAGCCCGCGGCCGTTCGACAACCGCCCGG 1674 Query 11697 TCTGGATTGGCTACGACCC--GTCGCACAC-CGGCGACAGCG-CAGGCTGTGCCGTTATC 11752 ||||| | || || ||||| |||| || | || |||| ||| | || || |||| Sbjct 1673 TCTGGCTCGGGTATGACCCCAGTCGAACCCGCGACGAC-GCGACGTGCGTTGTCGTT--- 1618 Query 11753 GCGCCGCCGCTGGTTGCGGGCGGCAAGTTTCGCGTGCTGGAGCGTCACCAGTGGCGGGGC 11812 || ||||| |||| ||||||||||||| || | |||||| ||| |||||||| Sbjct 1617 GCCCCGCCCCTGGAGCCGGGCGGCAAGTTCCGAATCCTGGAGAAGCACAGCTGGCGGGGG 1558 Query 11813 ATGGACTTTGCCGC-GCAGGCAAAATCCATTGAGGA-CTTAACGAAAAAATACACCGTCG 11870 | | | || ||| |||||||| || ||| | || || | | || |||| Sbjct 1557 A-CGTCGTTCACGCATCAGGCAAAGCAGATCGAGAAGCTGTGCG-AGCGCTTCAACGTCC 1500 Query 11871 AGTATATCGGCGTGGATGCGACCGGCATCGGCCAGGGCGTTTTCCAGCTGGTTCGCCAGT 11930 || | |||||| | || |||||| |||| | || || ||| | ||||| | | Sbjct 1499 AGCACATCGGCATCGACATTACCGGCGTCGGTTACGGGGTGTTCGACCTGGTGAAAGACT 1440 Query 11931 TCTACCCGGCGGCGCGTGAAATCCGTTACTCGCCGGAAGTGAAAACCGCGATGGTGCTGA 11990 ||| ||| ||| | || | ||| | ||| | ||| | || ||||||| | Sbjct 1439 TCTTCCCCCGGGCTACTCCGATTCACTACAGCCTGGAGGCGAAGAATGCCCTGGTGCTCA 1380 Query 11991 AGGCAAAAGACACCATCAGCAGCGGA--CGCCTGGAATACGATGCGGGCCAGACCGACAT 12048 |||| | ||| ||| ||| | | ||| | |||| ||||| || |||||| | Sbjct 1379 AGGCCCAGGACGTGATC--CAGGGCAAGCGCATCGAATGGGATGCCGGTTGGACCGAGGT 1322 Query 12049 TACGCAGTCTTTTATGGCAATC---CGCAAAACCATGACCGCCAGCGGCAACCGCTCCAC 12105 || | | || || | ||| ||| ||| || ||||||||| | | | || Sbjct 1321 CGCGGCGGCGTTCCTGTCGATCAAGCGCGGCACC---ACGGCCAGCGGC--CTGAT-TAC 1268 Query 12106 CTATGAGGCGAGCCGCAGCGAGGACGCCAGCCACGCCGACGTCGCCTGGGCAATCATGCA 12165 ||| ||| | | |||| || |||| |||||||| |||||| | |||||||| Sbjct 1267 CTACAGCGCGTCTAGGACTGAGGCAACCGGCCATGCCGACGTGGCCTGGTCGATCATGCA 1208 Query 12166 CGCCCTGCTTAACGAACCGCTGACCGC-CGCCAGCGGCGGCGC 12207 || ||| | | ||||| |||| | | | ||||||||||| Sbjct 1207 TGCGCTGGCTCATGAACCCCTGAACACAAACAAGCGGCGGCGC 1165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94480344540540