Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq4 197 2e-45 seq7 118 1e-21 seq8 111 2e-19 seq6 87.8 2e-12 >seq4 Length=32756842 Score = 197 bits (218), Expect = 2e-45 Identities = 213/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 ||| |||| |||||| ||||||||| || | ||||||| || |||| ||||||| || Sbjct 25315234 TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGT 25315175 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 161321 ||||| || ||| |||| || | | ||| || ||| || |||| || | ||||| Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCA 25315115 Query 161322 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGT 161381 ||| ||| ||| ||| |||||||| || ||||||||||| ||||||| ||| |||| Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 161382 CTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 161441 || ||||| |||||||||||||| |||||||| || || ||| | || ||||| ||||| Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 161442 GTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGT 161483 || ||||| | || || ||||| ||||| |||| |||| Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGT 25314953 >seq7 Length=41685129 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| || |||||| ||| |||| ||||| || |||||||||||| |||| || || Sbjct 40487277 GTGCGACGACGACGTCTACGTCCTCGACGCCGCGGAGGAAGCGGGTATCGATCTGCCCTA 40487218 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| ||| || || || ||| ||||||||||| || | || Sbjct 40487217 CTCATGCCGTGCGGGATCTTGCTCGAGCTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGA 40487158 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| | |||||| |||| |||| |||||||| || | || | | || || || Sbjct 40487157 CCAGACGGACCAGAGCTTCTTGGATGATGACCAGATGGGCGAGGGGTATGTCCTCACCTG 40487098 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGA 158552 ||| |||| || || |||| || || |||||| |||| ||||| Sbjct 40487097 TGTGGCTTACCCAACTTCTGATGTCGTCATCGAGACTCACAAAGAAGA 40487050 >seq8 Length=44809562 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| || |||||| ||| |||| ||||| ||||||||||| || |||| | ||| Sbjct 31673081 GTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTA 31673022 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| || ||||| || ||| | || ||||| | || || Sbjct 31673021 CTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGA 31672962 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| ||||| || |||||||| || | | || ||| |||| ||||| Sbjct 31672961 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTG 31672902 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 || |||||||||| |||| | |||||||| ||| ||||| || Sbjct 31672901 TGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGAAGA 31672851 >seq6 Length=32494073 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| || |||||| ||| |||| ||||| ||||||||||| || |||| | ||| Sbjct 22685575 GTGCGACGACGACGTTTACGTCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTA 22685516 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| ||| || || || ||| | || |||||| | || || Sbjct 22685515 CTCTTGCCGTGCCGGTTCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGCTCGGTTGA 22685456 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 158480 ||| |||||| ||||| || |||||||| || Sbjct 22685455 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGAT 22685420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547729774792200