Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq4 147 7e-31 >seq4 Length=32756842 Score = 147 bits (162), Expect = 7e-31 Identities = 199/273 (73%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 18222 TGCATAGCAGCGAATA--AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACG 18279 ||||||||| |||| |||| | |||||||| || || ||||| | ||| || || | Sbjct 25314965 TGCATAGCACTAAATAGGAAGC--CGCCGAATACACCAGCTACACCTAACATGTGAAATG 25315022 Query 18280 GATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAA 18339 | |||||||| || ||||| || ||||| ||||| | ||| || ||||||||||| | Sbjct 25315023 GGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGAAAGTACCAGAGA 25315082 Query 18340 TACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACT 18398 | || ||||||||||||| ||| ||||| ||||| |||| || || | | ||||| || Sbjct 25315083 TTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAA-ACA 25315141 Query 18399 GAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGT 18458 | | || ||| || | || ||||| |||||| |||||| | || ||||| || Sbjct 25315142 GCAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGACGTATACCCAGA 25315201 Query 18459 CTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 | ||||||||||||| | || |||| ||| Sbjct 25315202 CAGAAACTAAGTTCCCAATCACGATCCATATAA 25315234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151313826874230