Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq3 264 1e-65 seq4 156 5e-33 seq8 100 4e-16 >seq3 Length=44396707 Score = 264 bits (292), Expect = 1e-65 Identities = 444/638 (70%), Gaps = 7/638 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTG---A 101766 |||| | | || | ||| || ||||| |||| |||| || ||||||||| || || | Sbjct 24110541 AGAGTGCTTCCACGTGGTAAAACCTCCTCAGTGAATATAATGTTTTCATGAGGCTGCTGA 24110482 Query 101767 TCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAAC 101826 || | |||| ||| | || | |||||| || || || || || || |||||||| Sbjct 24110481 TCCTGAGCCGCCATCCAAGTGCGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGAAA 24110422 Query 101827 GTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGA 101886 || || || || |||||||| ||||| | || |||||||| | ||| |||| |||| Sbjct 24110421 GTTTC-AAGTCCGGATCTTCCGCTGCACAAATTTCTTGGGAAATGAAGCCATAGGCACAT 24110363 Query 101887 AGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACA 101946 ||||| | ||| ||||| | || | | | ||| ||| | ||| | || || ||| Sbjct 24110362 AGGTTCAAAGCTAGACCTACTATTACAAGAGCACTCATCCTTAAACCAGTTACTGGTACA 24110303 Query 101947 AAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGAC 102006 || | ||||||||| || ||||| ||||| ||| ||| ||||||||| | ||| Sbjct 24110302 AATAACATAAAGAATTGTAACCAATGTTTATTGGAAAAAGCAGCCCCAAAGATTCGTGAC 24110243 Query 102007 CAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCT 102066 || || ||||| || || |||||||||||||| ||||| |||| | | | || || Sbjct 24110242 CAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAATTGGGTTAAAAGCA 24110183 Query 102067 TTGAAAGTGTTTGCTTGATCACCATCTTC--ATACAGAGTGTTCTCCACAGTGACACCGT 102124 || | ||||| |||||||| ||| ||| | | | || || ||||| |||| | Sbjct 24110182 CATAATTTATTTGCACCATCACCATTTTCAGATAAAAAATATT-TCTACAGTAGCACCAT 24110124 Query 102125 GGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGT 102184 || || | | ||| || | ||||| | ||| |||| |||| || ||| |||| | Sbjct 24110123 CAATAGCGCATAACAGAGCCGCGCCCAGTACACCGGCAATTCCCAGCAAATGAAATGAAT 24110064 Query 102185 TGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACAC 102244 | || | ||| ||||| || || || | ||||| | ||||| |||||| || || |||| Sbjct 24110063 TCAGTGCCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 24110004 Query 102245 CAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGA 102304 |||| ||| ||||||||||| || || || || ||||| || ||||| || | Sbjct 24110003 CAAAACTAGGCACAAAGAACCAATCAGATTGACCTAGTGGATAAATTAGAAAGACTGAAA 24109944 Query 102305 CAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTG 102342 |||||||||| || || |||||||| | || | |||| Sbjct 24109943 CAAAAACAGCAATTGGACCAGAGAATGTGATTGTATTG 24109906 >seq4 Length=32756842 Score = 156 bits (172), Expect = 5e-33 Identities = 205/283 (72%), Gaps = 1/283 (0%) Strand=Plus/Plus Query 103548 TAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCA 103607 || |||| |||| ||||||||||| || || | || ||||| || ||||| || || | Sbjct 25314952 TACCAAG-GAACTATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTA 25315010 Query 103608 GCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGA 103667 |||||| || |||||||| |||||||| || || ||||| || || | ||| |||||| Sbjct 25315011 ACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGA 25315070 Query 103668 AGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGA 103727 | || || || || || | ||||||| ||| || || |||||||||| ||||||| Sbjct 25315071 AAGTACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGA 25315130 Query 103728 CCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGC 103787 |||||| || || || ||||||| ||| || ||||| ||| ||||| | | Sbjct 25315131 TCAAGAAAACAGCAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGAC 25315190 Query 103788 GCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830 | || ||||||| | | | |||||| ||||| ||||||| Sbjct 25315191 GTATACCCAGACAGAAACTAAGTTCCCAATCACGATCCATATA 25315233 Score = 82.4 bits (90), Expect = 1e-10 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 ||||| ||||| || |||| ||| ||||| |||| |||| || || ||||| || Sbjct 270202 GGGTAAGCCACACAAGTCAAGACATAACCTTTCTCTATGTGATGATCTTCAAGAAACGAA 270261 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 ||| || || || || || |||||||| || || || ||||||||||| Sbjct 270262 CCATCAGACTGGTCAACTTGGCCTTTCTCGATCTTACCGGCGCAGGTGGAACACGCACCG 270321 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA 103003 || | || || ||||||| |||||||||||||| ||||| || || | || || || Sbjct 270322 GCTCTGCAAGAGTAAGGCAAGTCAACACCTGCTTCTTCAGCCGCATCCAATATGTACTGG 270381 Query 103004 TCATC 103008 || || Sbjct 270382 TCGTC 270386 >seq8 Length=44809562 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 102280 AGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCA 102339 |||||||| || ||||| || ||||||||| | || | ||| |||| |||| ||| Sbjct 15118106 AGAGGATAAATTAGAAAGACGGAAACAAAAACATCAATTAGACCAAAGAATGCAACTGCA 15118047 Query 102340 TTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATG 102399 || || || || | | || | | ||| | || |||| | | | ||| ||||| || Sbjct 15118046 TTATAAGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTAATGCAACATAAAACCTATT 15117987 Query 102400 AGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTG 102459 | | || |||| ||||||||| ||||||||||| | || || ||||| ||| | Sbjct 15117986 AATGTGAAAGCACAGTGGAGAGCAACAAAAGCCCACATACCGCCTAGTTGACACCAACGA 15117927 Query 102460 ACGAAATCTCCTTGAGCTTCAGGACCCCAAAGT 102492 ||||||||||| ||||||||| |||| ||| Sbjct 15117926 GTAAAATCTCCTTGTGCTTCAGGATCCCACAGT 15117894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633493446348600