Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq4 131 5e-26 >seq4 Length=32756842 Score = 131 bits (144), Expect = 5e-26 Identities = 182/254 (72%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || || ||||| | ||||||||| || ||||||||||| ||||||||| Sbjct 25314986 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 25315045 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 || || || || | ||| ||||||| || || || || || | |||||| ||| |||| Sbjct 25315046 GCTTGAAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATTAGAA 25315105 Query 21999 AAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCA 22058 ||| || || |||| || || | | ||| |||||| | || || |||| ||| Sbjct 25315106 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATAACAATTGCAACAGAAGCT 25315165 Query 22059 GAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGT 22118 || || |||||| ||||| | | || || || | | ||||||||||| || || Sbjct 25315166 GAATATGCAACAGCAATCCAAAGACGTATACCCAGACAGAAACTAAGTTCCCAATCACGA 25315225 Query 22119 CCCATGTAAGCAAA 22132 |||| ||| |||| Sbjct 25315226 TCCATATAA-CAAA 25315238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146203581320100