Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4 149 7e-31 seq3 134 2e-26 seq2 105 8e-18 >seq4 Length=32756842 Score = 149 bits (164), Expect = 7e-31 Identities = 182/247 (74%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 124422 TAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTG 124481 || |||| |||| |||||| || |||| | || ||||| | || ||||| ||| Sbjct 25314952 TACCAAG-GAACTATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTA 25315010 Query 124482 CCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGA 124541 |||||| || || ||||| |||||||| ||||| ||||| || || | ||||||||||| Sbjct 25315011 ACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGA 25315070 Query 124542 AAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATA 124601 ||||||| ||||| || || |||||||||| ||| || || ||||||| |||||| | Sbjct 25315071 AAGTACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGA 25315130 Query 124602 CTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGAC 124661 ||||| ||||| | || | || | |||||||| |||||| |||||| ||| Sbjct 25315131 TCAAGAAAACAGCAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGAC 25315190 Query 124662 GCATTCC 124668 | || || Sbjct 25315191 GTATACC 25315197 >seq3 Length=44396707 Score = 134 bits (148), Expect = 2e-26 Identities = 401/617 (65%), Gaps = 24/617 (4%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| | | | || | |||||| || || || | ||||| || || ||||| || || Sbjct 24110545 TTAAAGAGTGCTTCCACGTGGTAAAACCTCCTCAGTGAATATAATGTTTTCATGAGGCTG 24110486 Query 122926 GTCAAC---AGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATA 122982 | | | || | |||||| | | || ||||| || | |||||| || || || || Sbjct 24110485 CTGATCCTGAGCCGCCATCCAAGTGCGAATACCTTCGTTTAAAAGAATATTTTTAGTGTA 24110426 Query 122983 GAAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGC 123042 |||||| || || || || ||||| ||||| | || ||||| || | ||| | || || Sbjct 24110425 GAAAGTTTC-AAGTCCGGATCTTCCGCTGCACAAATTTCTTGGGAAATGAAGCCATAGGC 24110367 Query 123043 TCTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGG 123102 | ||||| | ||||||||||| || | | || ||| | ||| | || || Sbjct 24110366 ACATAGGTTCAAAGCTAGACCTACTATTACAAGAGCACTCATCCTTAAACCAGTTACTGG 24110307 Query 123103 AACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTG 123162 || || ||||||| ||| ||||| | ||| || ||||| || ||||| || | Sbjct 24110306 TACAAATAACATAAAGAATTGTAACCAATGTTTATTGGAAAAAGCAGCCCCAAAGATTCG 24110247 Query 123163 TGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAA 123222 |||||| || | ||| || || | ||| |||||||||||| | || | || | || Sbjct 24110246 TGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAATTGGGTTAAA 24110187 Query 123223 TGCTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAA 123282 || | | ||| | | ||| ||| || || ||| | | || Sbjct 24110186 AGCACATA---------ATTTATTTGCACCATCACCATTTTCAGAT--------AAAAAA 24110144 Query 123283 TGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGC 123342 | | |||| || || ||||||| ||| || |||| | || | || |||| || || Sbjct 24110143 TAT-TTCT--ACAGTAGCACCATCAATAGCGCATAACAGAGCCGCGCCCAGTACACCGGC 24110087 Query 123343 AACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGAT 123402 || |||| || ||||||| ||||| || || || || ||||| | || | ||| Sbjct 24110086 AATTCCCAGCAAATGAAATGAATTCAGTGCCCAATTATGAAACCCTTGGAAAAAGAGGAT 24110027 Query 123403 ATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAG 123462 | ||||| || || || ||||| || || | ||||||||| |||||||| Sbjct 24110026 GAATCGAAATATAGCCGCTACACCAAAACTAGGCACAAAGAACCAATCAGATTGACCTAG 24109967 Query 123463 TGGATAGATCAGAAAGA 123479 |||||| || ||||||| Sbjct 24109966 TGGATAAATTAGAAAGA 24109950 >seq2 Length=44367670 Score = 105 bits (116), Expect = 8e-18 Identities = 153/213 (72%), Gaps = 16/213 (8%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || ||||| || || |||||||||||||| ||||| | Sbjct 41808345 CTTGAGCAGTACAGATGTTGCTAGTAGCTTTATCCCTCCTAATATGCTGCTCCCTAGTCT 41808404 Query 139375 GTAGTGCTAATCTGTATGCAG-GATTGCCTTCGCTGTC-------CACTGACTGACCTAC 139426 | | || | || |||| | |||| ||| | || |||| || ||| | Sbjct 41808405 GCATAGCCA-----TACGCAGAGCTTGC-TTCCCAGTAGAATCAACACTAAC--ACCAAT 41808456 Query 139427 AATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGG 139486 ||| || ||||| ||| |||||||||||| | | || || || || ||||| || || Sbjct 41808457 AATCCTCCCAGGCATCATTCTCTTATACTCTCCCGAAGTAGCCAAAAACGCAGCGTGGGG 41808516 Query 139487 ACCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 ||| ||||| ||||| |||| ||||||||| || Sbjct 41808517 ACCACCGTAACCCATCGGAACACCAAACCTCTG 41808549 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| ||||| | ||||| || ||||||||||| ||||||||||| ||||| || Sbjct 41806582 ACACCAATGGGACCCATTCCAGGCCCACCACCTCCATGAGGAATACAGAAGGTCTTGTGG 41806641 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | ||| ||||| || ||||| || ||| Sbjct 41806642 AGATTGAGATGGCACACATCCGCTCCA 41806668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578979980613400