Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3 230 3e-55 seq4 170 3e-37 seq2413 122 1e-22 seq8 118 1e-21 seq6 113 6e-20 seq7 95.1 2e-14 >seq3 Length=44396707 Score = 230 bits (254), Expect = 3e-55 Identities = 382/548 (70%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 23480 GTTCAACAAAATATTTTTCGTGTAGAAGGTCTCA--TACGAACCATCTTCAGCAGCACGA 23537 ||| || | ||||||||| |||||||| || ||| | || | ||||| || |||| | Sbjct 24110449 GTTTAAAAGAATATTTTTAGTGTAGAAAGTTTCAAGTCCGGA---TCTTCCGCTGCACAA 24110393 Query 23538 ATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATA 23597 || ||||| | || |||| |||| || || | ||| || || | || ||| | Sbjct 24110392 ATTTCTTGGGAAATGAAGCCATAGGCACATAGGTTCAAAGCTAGACCTACTATTACAAGA 24110333 Query 23598 GAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTA 23657 | | | || | ||| | || || ||||| ||||||||||| || |||||| | ||| Sbjct 24110332 GCACTCATCCTTAAACCAGTTACTGGTACAAATAACATAAAGAATTGTAACCAATGTTTA 24110273 Query 23658 TTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAG 23717 ||| ||| ||| |||| |||||| |||||||||| || || || || ||||| ||||| Sbjct 24110272 TTGGAAAAAGCAGCCCCAAAGATTCGTGACCAAAAGCGGTTAGCGGTGACCATTGAATAA 24110213 Query 23718 GTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCA 23777 || || || | ||| | | | || || || | ||||| || |||| |||| Sbjct 24110212 GTTTCTTCGGCTTGAATTGGGTTAAAAGCACATAATTTATTTGCACCATCACCATTTTCA 24110153 Query 23778 --TACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTA 23835 || | |||| || |||||| | |||| |||||| | | || || | ||||||| Sbjct 24110152 GATAAAAAATATT-TCTACAGTAGCACCATCAATAGCGCATAACAGAGCCGCGCCCAGTA 24110094 Query 23836 TACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGA 23895 ||| |||| ||||| || ||| || | || || | ||| |||||||| || |||| | Sbjct 24110093 CACCGGCAATTCCCAGCAAATGAAATGAATTCAGTGCCCAATTATGAAACCCTTGGAAAA 24110034 Query 23896 AGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACT 23955 |||| | ||| | || || ||||| ||||| ||||| ||| ||||||||||| || | Sbjct 24110033 AGAGGATGAATCGAAATATAGCCGCTACACCAAAACTAGGCACAAAGAACCAATCAGATT 24109974 Query 23956 GTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAA 24015 | || | ||||| || || || || || || || |||||||| |||||||| || | | Sbjct 24109973 GACCTAGTGGATAAATTAGAAAGACTGAAACAAAAACAGCAATTGGACCAGAGAATGTGA 24109914 Query 24016 TCGCATTG 24023 | | |||| Sbjct 24109913 TTGTATTG 24109906 >seq4 Length=32756842 Score = 170 bits (188), Expect = 3e-37 Identities = 202/271 (75%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 27121 TGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGG 27180 ||||||||| || || | || |||||||| ||||| ||||| | |||||| || ||| Sbjct 25314965 TGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGG 25315024 Query 27181 TGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATA 27240 |||||||| || ||||| || || || ||||||| ||| |||| |||||||||||||| Sbjct 25315025 TGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGAAAGTACCAGAGATT 25315084 Query 27241 CCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCA 27300 || ||||||||| ||| || ||| |||||||| | || |||| | ||| || ||| Sbjct 25315085 CCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 25315144 Query 27301 CTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAAC-G 27359 | || || || | ||| |||||||| ||| ||||| |||| ||||| | || | Sbjct 25315145 ATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGACGTATACCCAGACAG 25315204 Query 27360 ATATGAGAGTTCCCACTCACGTCCCATATAA 27390 | | | |||||||| ||||| |||||||| Sbjct 25315205 AAACTA-AGTTCCCAATCACGATCCATATAA 25315234 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 32657 GGATATGCAACACAAGTGAGCACA-AACCCTTCTTCAATTTGATCATCATCCAAGAACGA 32715 || || || |||||||| | ||| |||| |||| ||| || |||||| || | ||||| Sbjct 10110679 GGGTAAGCCACACAAGTCAAGACATAACCTTTCTCCAAGTT-ATCATCCTCAAGAAACGA 10110621 Query 32716 CTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACC 32775 |||| ||||| ||| ||| | |||||||| || || | ||||||||||| Sbjct 10110620 ACCATCAGACTGGTCAACTTGACCTTTCTCGATCTTACCGGCGCAGGTGGAACAGGCACC 10110561 Query 32776 TGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTG 32835 || | |||||||| || ||||| ||| |||| || |||||||| | |||||||| Sbjct 10110560 GGCTCTGCAAGAGTAAGGCAAGTCAACTCCAGCTTCTTCGGCTGCATCCAATATGTATTG 10110501 Query 32836 ATCATC 32841 || || Sbjct 10110500 GTCGTC 10110495 >seq2413 Length=755821 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692 || ||||| |||| |||||||| ||||| || |||||||||| ||||||||||| || Sbjct 504395 GTCTCAATGGTAACGTCAGAAGTAGGATACGCCGCACAAGTGAGAACAAACCCTTCAGCA 504454 Query 32693 ATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTA 32752 || || |||||||| | ||| ||| ||| ||||| || | || || |||| ||| Sbjct 504455 ATCTGGTCATCATCGAGGAAACTCTGGTCAGACTGGTCAACAGATCCGGACACAACTTTA 504514 Query 32753 CCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCC 32812 || ||||| || |||| ||| ||||| |||||||| || || | ||| ||||| Sbjct 504515 CCCGCACAGCTCGAGCAGGAACCGGCACGGCAAGAGTAAGGCAAGTCGATCCCGGCTTCC 504574 Query 32813 TCTGCTGCATCAAGGATGTA 32832 || || || || |||| ||| Sbjct 504575 TCCGCAGCGTCGAGGACGTA 504594 >seq8 Length=44809562 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692 || ||||| ||||||||||||| ||||| || |||||||||| || || ||||| || Sbjct 31672866 GTCTCAATGGTAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCAGCA 31672925 Query 32693 ATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTA 32752 || || |||||||| | ||| ||| ||| ||||| || | ||||| |||| ||| Sbjct 31672926 ATCTGGTCATCATCGAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTA 31672985 Query 32753 CCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCC 32812 |||||||| || || | ||| ||||| |||||||| || || | || ||||| Sbjct 31672986 CCTGCACAGCTGGAGCAAGAACCAGCACGGCAAGAGTAAGGCAAGTCGATTCCGGCTTCC 31673045 Query 32813 TCTGCTGCATCAAGGATGTA 32832 || || || || |||| ||| Sbjct 31673046 TCAGCAGCGTCGAGGACGTA 31673065 Score = 113 bits (124), Expect = 6e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23959 CCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCG 24018 ||| |||||| || || || || || || || ||| |||| ||||| | || |||| | Sbjct 15118108 CCAGAGGATAAATTAGAAAGACGGAAACAAAAACATCAATTAGACCAAAGAATGCAACTG 15118049 Query 24019 CATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCT 24077 |||| || || || | | || ||| || || |||||||| | | | |||||||||||| Sbjct 15118048 CATTATAAGGTCGCAATTGAAC-AGATCGAGCAAGTTCAAATTAATGCAACATAAAACCT 15117990 Query 24078 ATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCAC 24137 || | || || |||| ||||||||||||||| | ||| | || || ||||| ||| Sbjct 15117989 ATTAATGTGAAAGCACAGTGGAGAGCAACAAAAGCCCACATACCGCCTAGTTGACACCAA 15117930 Query 24138 CGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGT 24173 || ||| || ||||| | |||||| |||| ||| Sbjct 15117929 CGAGTAAAATCTCCTTGTGCTTCAGGATCCCACAGT 15117894 >seq6 Length=32494073 Score = 113 bits (124), Expect = 6e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 32643 TAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCAT 32702 ||||||||||||| || || || | |||||||| ||||||||||| |||| || |||| Sbjct 22685370 TAACATCAGAAGTAGGGTACGCCGCGCAAGTGAGGACAAACCCTTCAGCAATCTGGTCAT 22685429 Query 32703 CATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAG 32762 |||| | ||| ||| ||| ||||| || | ||||| |||| |||||||| || Sbjct 22685430 CATCGAGGAAACTCTGGTCAGACTGGTCAACCGAGCCAGACACAACTTTACCTGCGCAGC 22685489 Query 32763 ATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCAT 32822 || || | ||| ||||| |||||||| || || | ||| ||||||| || || | Sbjct 22685490 TCGAGCAAGAACCGGCACGGCAAGAGTAAGGCAAGTCGATCCCTGCTTCCTCAGCAGCGT 22685549 Query 32823 CAAGGATGTA 32832 | |||| ||| Sbjct 22685550 CGAGGACGTA 22685559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 180/267 (67%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || ||||| ||||| ||| | || ||| |||||||| || |||| || || Sbjct 15977825 ATCAGAGCAGGAAGCACATGAGAATTCTCCGGGTGGAAATTATCGTTCTGACCGTAGAGA 15977766 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCA-TACTGCTGAT---GGTATGCCTGACA 47095 || || ||||| ||||| |||| ||| | |||||| |||| |||||||| Sbjct 15977765 TTCGTCGGCATACCGGAGATCGCATC----CCACTGATGCTGAACCCGGTACGCCTGACA 15977710 Query 47096 CATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACC 47155 ||||||||| || || ||||| || || || || | || || | || || || || || Sbjct 15977709 CATCTTGATCCCCGCGATCTTGGCGATCGCGTACCACTCGTTGGTGGGCTCGAGTGGGCC 15977650 Query 47156 ACTCATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGA 47215 | | ||| | ||| || || || | |||||||| || |||||||| || Sbjct 15977649 TGTGAGGAGAGCTGATTCGGGTATGGGCTGAGGAGCGAATTTTGGGTAGATGCAGGAGGA 15977590 Query 47216 ACCAAGAAATAAAAGTTTCTTAACACC 47242 || || || | |||||||| || || Sbjct 15977589 GCCGAGGAAGAGGAGTTTCTTGACGCC 15977563 >seq7 Length=41685129 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | ||| || || | |||||||||||||| || || ||||| ||||| ||| Sbjct 40487050 TCTTCTTTGTGAGTCTCGATGACGACATCAGAAGTTGGGTAAGCCACACAGGTGAGGACA 40487109 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 |||| || | || || |||||||||||||| ||| || | ||||| | | ||| Sbjct 40487110 TACCCCTCGCCCATCTGGTCATCATCCAAGAAGCTCTGGTCCGTCTGGTCAATGGAGCCA 40487169 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || || | || || || || || || | || ||||| || |||||| | ||| Sbjct 40487170 GAGACGACTTTCCCGGCGCAGCTCGAGCAAGATCCCGCACGGCATGAGTAGGGCAGATCG 40487229 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | || ||||||| || || || |||| ||| Sbjct 40487230 ATACCCGCTTCCTCCGCGGCGTCGAGGACGTA 40487261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665473228959400