Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8 125 9e-24 seq4 123 3e-23 seq3 113 5e-20 seq6 104 3e-17 seq7 93.3 5e-14 >seq8 Length=44809562 Score = 125 bits (138), Expect = 9e-24 Identities = 296/445 (67%), Gaps = 4/445 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || |||||| |||||| ||| Sbjct 32327400 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCTCGGATCCCGAAAGGT 32327459 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | |||||| | ||| || ||||| || || |||||| | || ||||| || ||| Sbjct 32327460 GTCCTTCTTGTTGGTCCTCCTGGTACTGGTAAAACCCTCTTGGCGAAGGCCATTGCTGGT 32327519 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||| | | | ||||| ||||||||||| ||| Sbjct 32327520 GAAGCCGGTGTGCCTTTCTTCTCCATCTCGGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 32327579 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| ||||| || ||||| || ||| ||| || ||| || || ||| Sbjct 32327580 GTTGGTGCTTCGAGGGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAATGCTCCGTGCATT 32327639 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAG 175534 || || | || ||||||||||| || || | ||| | | |||| | | | || Sbjct 32327640 GTTTTTGTGGACGAGATTGATGCTGTTGGTAGGCAGAGGGGAACTGGAATCGGTGG--AG 32327697 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 ||||| |||||||| || || ||||||| || | || ||||||||||| ||||| Sbjct 32327698 GTAATGATGAGAGAGAGCAGACGCTTAATCAGCTCTTGACTGAGATGGATGGGTTTGAGG 32327757 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCC 175654 | | ||||| || | || |||| || || ||| | | ||||| ||||| ||| Sbjct 32327758 GTAACACTGGTGTTATTGTGGTTGCTGCAACCAATAGAGCAGATATTCTTGACTCTGCCT 32327817 Query 175655 TCCTTCGCCCGGGTCGTTTTGATCG 175679 | || | || || |||||||| || Sbjct 32327818 TGCTGAGACCAGGGCGTTTTGACCG 32327842 >seq4 Length=32756842 Score = 123 bits (136), Expect = 3e-23 Identities = 298/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || |||||| ||||| ||| Sbjct 20996042 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCTCGAATCCCGAAAGGT 20996101 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || |||||||| || |||||||| || ||||| || ||| Sbjct 20996102 GTTCTCCTTGTTGGTCCTCCTGGTACGGGGAAAACCCTCCTGGCAAAGGCCATTGCTGGT 20996161 Query 175357 GAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGG 175415 ||| | ||| || ||| | || | ||| | | | ||||| ||||||||||| || Sbjct 20996162 GAAGCTGGTGTACCTTTCTTTTCAAT-CTCGGGGTCTGAGTTTGTTGAGATGTTTGTCGG 20996220 Query 175416 TGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTAT 175475 ||| ||||| |||||| || ||||| || ||| ||| ||||| || || || Sbjct 20996221 TGTTGGTGCTTCAAGGGTCCGTGATCTTTTCAAAAAGGCCAAGGAAAACGCTCCCTGCAT 20996280 Query 175476 TGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCC 175532 |||||| | ||||| || ||||| || || | |||| | | | || |||| Sbjct 20996281 TGTCTTTGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GG 20996337 Query 175533 AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 || ||||| || |||||||| || ||||||| || | || ||||||||||| ||||| Sbjct 20996338 AGGTAATGATGAAAGAGAACAGACGCTTAATCAGCTCTTGACGGAGATGGATGGTTTTGA 20996397 Query 175593 CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGC 175652 | | ||||| | | || |||| || || || | | ||||| ||||| || Sbjct 20996398 AGGTAACACTGGTGTCATCGTAGTTGCTGCAACCAACAGAGCAGATATTCTTGACTCTGC 20996457 Query 175653 CCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | | ||| | || || |||||||| || Sbjct 20996458 CTTGCTTAGACCAGGCCGTTTTGACCG 20996484 Score = 100 bits (110), Expect = 3e-16 Identities = 280/424 (66%), Gaps = 17/424 (4%) Strand=Plus/Minus Query 177549 GAAGCACATTTCAACAAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATT 177607 |||| ||| || | ||||| |||| || | ||||| |||| | || || || || || | Sbjct 11632717 GAAGGACACGTCCAGAAACT-CCTCGACGGTGTGTGACTCCTCAGTTGCCACGACGTAAT 11632659 Query 177608 CATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGAC 177667 |||| | | || || || |||||||||||||| || || || |||||| || || Sbjct 11632658 CATCTGGTTTCTCCTGCTGCAGCATGAGCCACATTGCCTCGACGTAGTCCCCTGCGAAAC 11632599 Query 177668 CCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAA 177727 |||||||||| | || | | ||| || || | || || ||| | || | Sbjct 11632598 CCCAGTCTCTTGACGCCTGTATGTTTCCCAGG---AAGAGCTTGGTCTG--CAGTCCGAC 11632544 Query 177728 TTTGTTTGACGCCATCAGTAATCTTCTTT-----GTGACAAAGTCGGCACCTCGTCTCGG 177782 ||| | | ||| | || ||| || || |||| | ||||| | || Sbjct 11632543 CTTGATCCTCCCCAAGGCCCGTGTTATTTTACGAGTCACGAAGTTCTCGCCTCGACGGGG 11632484 Query 177783 TGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATT 177842 ||| ||||||||||| ||||| ||| |||||| || | || || | ||||| |||||| Sbjct 11632483 TGACTCGTGGTTGAACAGGATCCCGTTGCAGGCGTAGAGGCCGTATGCTTCTCTGTAATT 11632424 Query 177843 TTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGG 177902 | | |||||||||||| | ||||||| | ||||| |||| || | ||||| Sbjct 11632423 GACGGTGTACCAGTGAGCGGCGACTTTGGAGGCAGCATAGGGAGATCTGGGATGAAAGGG 11632364 Query 177903 TGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTT 177961 || ||||| ||| |||| ||| || | || ||||||||||| | | ||| | Sbjct 11632363 AGTGGTCTCAGATTGGGGAG----GAGGAGTTGAGCCGAACATCTCCGAGGATCCGGCCT 11632308 Query 177962 GGTA 177965 |||| Sbjct 11632307 GGTA 11632304 >seq3 Length=44396707 Score = 113 bits (124), Expect = 5e-20 Identities = 277/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||| ||| | || ||||| | || | ||||||| |||||| Sbjct 13017037 GAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCAGTTGGTGCCCGGATCCCG 13017096 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | || || ||| || ||||| |||||||| || | || ||| || Sbjct 13017097 AAAGGTGTTCTGCTTATTGGTCCTCCTGGTACTGGAAAGACGCTATTGGCGAAAGCTATT 13017156 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| || ||| || ||| | | | ||||| ||||||||| Sbjct 13017157 GCCGGTGAAGCTGGTGTGCCGTTCTTCTCCATCTCCGGATCTGAGTTTGTTGAGATGTTT 13017216 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 || ||||| |||||| || || || ||||| || | | ||| || || || Sbjct 13017217 GTCGGTGTTGGTGCCTCCAGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAGAACGCTCCT 13017276 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGT 175527 || |||||||| | |||||||||||||| || || | |||| | | | || |||| Sbjct 13017277 TGCATTGTCTTTGTAGATGAGATTGATGCTGTTGGTAGGCAAAGAGGAACAGGAATTGGT 13017336 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 || ||||| || ||||| || || | || || || || || ||||||||||| Sbjct 13017337 ---GGAGGTAATGATGAAAGAGAGCAGACTTTGAACCAGCTGCTAACTGAGATGGATGGG 13017393 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 ||||| | | ||||| || | ||| |||| || || ||| | | || || ||||| Sbjct 13017394 TTTGAAGGTAACACTGGTATCATCGTTGTTGCTGCAACCAATAGAGCAGACATTCTTGA 13017452 >seq6 Length=32494073 Score = 104 bits (114), Expect = 3e-17 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 ||||||||| ||||||| ||| ||| | ||| | |||| |||| |||||| | Sbjct 29608757 GAAGAAGGCCCAATGGGCCTTGACGTGGATCGACGGA---TCTCAGGCCTTTGCCGAGAG 29608701 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | |||||||| || ||||| || || ||||||||||| |||||| | || | Sbjct 29608700 GATCGTGGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCCGGTAGCTTCTGCTCGATCTT 29608641 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| |||||||||| || |||||||| || || |||||| || || || || || | Sbjct 29608640 CTGGCTGAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAG 29608581 Query 65202 AGATGAGGGTCTCCAC 65217 ||| ||||| || ||| Sbjct 29608580 AGACGAGGGCCTGCAC 29608565 >seq7 Length=41685129 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || ||||| || | || ||||| | || || ||| | || || ||| Sbjct 18319743 CCTGGGACTGGTAAGACGCTTTTAGCTAGAGCCGTGGCTGGAGAAGCTGGAGTGCCGTTC 18319802 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | ||||| ||| | ||||| ||||| ||||| || ||| Sbjct 18319803 TTCTCTTGCGCGGCTTCTGAGTTTGTTGAGCTTTTTGTCGGTGTTGGTGCGTCTAGAGTT 18319862 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||| | || | || || |||||||| || |||||||||||| Sbjct 18319863 AGGGATTTGTTTGAGAAGGCTAAGGCCAAGGCGCCTTGTATTGTTTTTATTGATGAGATT 18319922 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| ||||| | ||| | | ||||| ||| | | || ||||| ||||| || | Sbjct 18319923 GATGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGGAATGATGAGAGGGAGC 18319980 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | || |||||||| || | || ||||||||||| || Sbjct 18319981 AGACGATTAATCAGCTGTTGACTGAGATGGATGGGTT 18320017 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 76757 ACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 76816 || |||||||| || ||| || | || |||| ||||| | |||||||| |||| Sbjct 5828931 ACTGTGTGGGAGATTAAGCAGAGAACAGTGGTTGATATGGCAGTTGATCGTGGATGCTTT 5828990 Query 76817 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGA-AAGTCCAACGATGTCCAAGCTCTC 76875 ||||||||||| |||||| ||||| || |||||| || ||||| || |||| ||| | Sbjct 5828991 ATTGATCAAAGCCAAAGTTTGAATATACACATGGACAAACCCAACTTTG-CCAAACTCAC 5829049 Query 76876 TTCTATGCATATGTACGCGTGGAAACAGG 76904 ||| | ||| | || | |||||| ||| Sbjct 5829050 TTCCTTACATTTCCACACTTGGAAAAAGG 5829078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550621629600