Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq3 259 5e-64 seq4 165 9e-36 seq1 95.1 1e-14 seq8 84.2 2e-11 >seq3 Length=44396707 Score = 259 bits (286), Expect = 5e-64 Identities = 445/642 (69%), Gaps = 7/642 (1%) Strand=Plus/Plus Query 167394 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCC 167453 |||| | || | ||||||||||| |||||||| || ||| || || || | ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 167454 CCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATT 167513 || |||||| |||||||||| || || || || || || || || ||||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 167514 CCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGT 167573 | ||||||| ||||||| || || || ||| |||||||| |||||||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 167574 AGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATAC 167633 || ||| | ||||| | || || | | || || |||||| ||| ||||| |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 167634 TTTGTA--TGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAA 167691 ||| || |||| ||||||| ||||| | || || || | | | ||| | Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 167692 GAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCT 167751 ||||| |||||||||||||| || || ||||| || ||||| | ||||| || |||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 167752 TTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGG 167811 || ||| |||| ||| | || |||||||||||||| || || || | || | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 167812 ACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCT 167871 | | ||| || | ||||| ||| | || || |||| || | ||| |||| Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 167872 CAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTT 167931 ||||| || | || ||||| ||||| || ||||||||||||| |||||||| || ||| Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 167932 CTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGAT---CAACCTCATGAGAACTTT 167988 | || |||||| |||| | ||| | || || ||| || |||||||| ||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 167989 GTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 | ||| | ||||| ||| | ||||| || | | | || ||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAA 24110545 >seq4 Length=32756842 Score = 165 bits (182), Expect = 9e-36 Identities = 198/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155 || |||| |||||| |||||||| || | |||| ||||| |||| ||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 166156 GCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAA 166215 || || ||||| | || || || | ||| || ||| | | || || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 166216 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTC 166275 || ||||| ||| ||| ||||| || |||||||| || || ||||||| ||| | || Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 166276 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 166335 || |||||||||||||| ||||| ||||| || || || ||| | || || ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 166336 TTTGGTGGCAGTTTGTTTAGTGCTATGCA 166364 || || ||| | |||||||||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCA 25314965 >seq1 Length=30920229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 22712204 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 22712263 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 22712264 GGTTCGAATCCTACTTGGGGAG 22712285 >seq8 Length=44809562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 167245 CTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGG 167304 || |||| ||||||| | ||||| ||||| | ||| ||||| || || | ||| Sbjct 15117895 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 15117954 Query 167305 GCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAA 167364 |||||||| || |||||| | || || | | || ||||| ||| | | | |||||| Sbjct 15117955 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 15118014 Query 167365 CTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGC 167423 |||||||| ||| || | || || || ||||| |||| |||| ||||| |||| Sbjct 15118015 CTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGA 15118073 Query 167424 TGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCT 167456 ||| || ||| ||| || || | ||||| || Sbjct 15118074 TGTTTTTGTTTCCGTCTTTCTAATTTATCCTCT 15118106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561230145298000