Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq4 131 5e-26 >seq4 Length=32756842 Score = 131 bits (144), Expect = 5e-26 Identities = 182/254 (72%), Gaps = 1/254 (0%) Strand=Plus/Minus Query 41555 TTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATC 41614 |||| ||| |||| || || ||||||||||| | | || || || | | ||||| Sbjct 25315238 TTTG-TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATT 25315180 Query 41615 TTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTT 41674 |||||| || || ||| |||| || || | |||||| ||| | | || || || Sbjct 25315179 GCTGTTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATT 25315120 Query 41675 GGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATG 41734 || || || ||||||| ||| |||||| | || || || || || ||||||| ||| Sbjct 25315119 GGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 25315060 Query 41735 CTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCC 41794 | || || || ||||||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 25315059 GTTGTATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 25315000 Query 41795 GGCGTATTTGGTGG 41808 || ||||| || || Sbjct 25314999 GGTGTATTCGGCGG 25314986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146209981126680