Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq4 120 9e-23 >seq4 Length=32756842 Score = 120 bits (132), Expect = 9e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 42625 CGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCT 42684 || || ||||||||| | | | || || || | | ||||| |||||| || || Sbjct 25315224 CGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTTGCATATTCA 25315165 Query 42685 GCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTT 42744 || |||| || | | ||| || ||| | |||| ||| |||| ||||| |||| Sbjct 25315164 GCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTT 25315105 Query 42745 TCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCT 42804 || |||| |||||||| || || || ||||| |||||||| ||| | || || || ||| Sbjct 25315104 TCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTTCAAGCT 25315045 Query 42805 GAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGG 42863 || || |||||||||||||| || || || ||| | ||||| || || ||||| || || Sbjct 25315044 GAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGG 25314986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143528462169660